Variant report

Variant	rs61879142
Chromosome Location	chr11:36049828-36049829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1358986	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1358987	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs262425	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4547071	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57144163	0.89[ASN][1000 genomes]
rs58189852	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58230129	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60312060	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61879138	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61879139	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61879140	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61879141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118616	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7927137	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7927259	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs995328	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv554002	chr11:36025118-36052212	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36027600-36051600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:36031400-36052000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:36037800-36051800	Weak transcription	Fetal Brain Male	brain
4	chr11:36041200-36051600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:36041600-36054200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:36041600-36058400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:36041800-36055000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:36042800-36051000	Weak transcription	Brain Substantia Nigra	brain
9	chr11:36045000-36059800	Weak transcription	Fetal Kidney	kidney
10	chr11:36045400-36051600	Weak transcription	Brain Anterior Caudate	brain
11	chr11:36045400-36051600	Weak transcription	Fetal Stomach	stomach
12	chr11:36045800-36050800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:36045800-36056000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:36046200-36050800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:36046200-36051000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:36046200-36051200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:36046200-36051600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:36046200-36051800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:36046200-36052000	Weak transcription	Osteobl	bone
20	chr11:36046200-36055200	Weak transcription	HMEC	breast
21	chr11:36046200-36055800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:36046200-36056000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:36046200-36056000	Weak transcription	NHEK	skin
24	chr11:36046400-36051000	Weak transcription	NHDF-Ad	bronchial
25	chr11:36046400-36051200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:36046400-36051400	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:36046400-36051600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr11:36046400-36052000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr11:36046400-36054800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr11:36046400-36056800	Weak transcription	Esophagus	oesophagus
31	chr11:36046400-36058600	Weak transcription	Spleen	Spleen
32	chr11:36046600-36051600	Weak transcription	Ovary	ovary
33	chr11:36046600-36054200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr11:36046600-36059000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:36046800-36051600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:36046800-36051600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr11:36046800-36051600	Weak transcription	HSMM	muscle
38	chr11:36046800-36054800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr11:36048000-36050000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:36048200-36054600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr11:36048400-36052200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr11:36048400-36053400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:36048400-36054800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr11:36048400-36054800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr11:36048400-36054800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr11:36048800-36050000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr11:36048800-36050000	Enhancers	Fetal Heart	heart
48	chr11:36049000-36050000	Enhancers	Fetal Intestine Small	intestine
49	chr11:36049000-36050000	Enhancers	Psoas Muscle	Psoas
50	chr11:36049200-36050000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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