Variant report

Variant	rs262425
Chromosome Location	chr11:36039939-36039940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36039363..36041482-chr11:36044480..36046857,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1358986	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1358987	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs262429	0.91[AMR][1000 genomes]
rs262432	0.85[AMR][1000 genomes]
rs4547071	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57144163	0.93[ASN][1000 genomes]
rs58189852	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58230129	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60312060	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61879138	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61879139	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61879140	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61879141	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61879142	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7118616	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927137	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927259	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs995328	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv554002	chr11:36025118-36052212	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36026600-36041200	Weak transcription	Pancreas	Pancrea
2	chr11:36027600-36051600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:36031000-36046000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:36031200-36044200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:36031400-36052000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:36031600-36040800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:36031800-36040800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:36032200-36040800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:36032400-36040200	Weak transcription	Brain Germinal Matrix	brain
10	chr11:36032400-36044600	Weak transcription	Fetal Brain Female	brain
11	chr11:36032400-36045600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:36032600-36041000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:36034800-36041200	Weak transcription	NHDF-Ad	bronchial
14	chr11:36036200-36041200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:36036800-36041000	Weak transcription	Esophagus	oesophagus
16	chr11:36037200-36049000	Weak transcription	Fetal Intestine Small	intestine
17	chr11:36037600-36040200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:36037600-36040800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:36037600-36041000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:36037600-36044600	Weak transcription	Fetal Kidney	kidney
21	chr11:36037800-36040200	Weak transcription	Brain Angular Gyrus	brain
22	chr11:36037800-36040600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:36037800-36041000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:36037800-36041000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:36037800-36041000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr11:36037800-36041000	Weak transcription	Psoas Muscle	Psoas
27	chr11:36037800-36041000	Weak transcription	HSMM	muscle
28	chr11:36037800-36041200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:36037800-36044400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:36037800-36045400	Weak transcription	Fetal Heart	heart
31	chr11:36037800-36046200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr11:36037800-36051800	Weak transcription	Fetal Brain Male	brain
33	chr11:36038200-36041000	Weak transcription	Brain Hippocampus Middle	brain
34	chr11:36038200-36041000	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:36038400-36040200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:36038400-36040800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr11:36038400-36041000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr11:36038600-36045400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:36038800-36040600	Weak transcription	HSMMtube	muscle
40	chr11:36038800-36040800	Weak transcription	Ovary	ovary
41	chr11:36038800-36041200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:36038800-36044200	Weak transcription	Fetal Stomach	stomach
43	chr11:36039000-36041600	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr11:36039400-36040200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr11:36039400-36041800	Enhancers	Brain Substantia Nigra	brain
46	chr11:36039400-36042400	Enhancers	HMEC	breast
47	chr11:36039600-36040000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:36039600-36040000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:36039600-36040000	Weak transcription	Brain Anterior Caudate	brain
50	chr11:36039600-36040400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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