Variant report

Variant	rs4547071
Chromosome Location	chr11:36052138-36052139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35682977..35684722-chr11:36051570..36053070,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166326	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1358986	0.94[EUR][1000 genomes]
rs1358987	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs262425	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57144163	0.80[ASN][1000 genomes]
rs58189852	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58230129	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60312060	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61879138	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61879139	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61879140	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61879141	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61879142	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7118616	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7927137	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7927259	1.00[CEU][hapmap];0.84[CHB][hapmap];0.83[GIH][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs995328	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv554002	chr11:36025118-36052212	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36041600-36054200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:36041600-36058400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:36041800-36055000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:36045000-36059800	Weak transcription	Fetal Kidney	kidney
5	chr11:36045800-36056000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:36046200-36055200	Weak transcription	HMEC	breast
7	chr11:36046200-36055800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:36046200-36056000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:36046200-36056000	Weak transcription	NHEK	skin
10	chr11:36046400-36054800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:36046400-36056800	Weak transcription	Esophagus	oesophagus
12	chr11:36046400-36058600	Weak transcription	Spleen	Spleen
13	chr11:36046600-36054200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:36046600-36059000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:36046800-36054800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:36048200-36054600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:36048400-36052200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:36048400-36053400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr11:36048400-36054800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:36048400-36054800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr11:36048400-36054800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:36049600-36055600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:36049600-36073600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:36050000-36054800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:36050000-36065800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:36050800-36052600	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr11:36050800-36055400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:36050800-36057600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:36051000-36053200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:36051000-36053600	Enhancers	Brain Substantia Nigra	brain
31	chr11:36051000-36053800	Enhancers	NHDF-Ad	bronchial
32	chr11:36051200-36053200	Weak transcription	Fetal Intestine Small	intestine
33	chr11:36051200-36053400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:36051200-36053400	Enhancers	NHLF	lung
35	chr11:36051200-36055200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:36051400-36052200	Enhancers	Left Ventricle	heart
37	chr11:36051400-36054800	Enhancers	Fetal Muscle Leg	muscle
38	chr11:36051400-36057200	Enhancers	HSMMtube	muscle
39	chr11:36051600-36052200	Enhancers	Pancreas	Pancrea
40	chr11:36051600-36052400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:36051600-36052400	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr11:36051600-36052600	Enhancers	Brain Anterior Caudate	brain
43	chr11:36051600-36052600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr11:36051600-36053000	Enhancers	Fetal Heart	heart
45	chr11:36051600-36053400	Enhancers	Adipose Nuclei	Adipose
46	chr11:36051600-36053400	Enhancers	Fetal Stomach	stomach
47	chr11:36051600-36053400	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr11:36051600-36053600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:36051600-36053600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr11:36051600-36053600	Enhancers	Brain Cingulate Gyrus	brain

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