Variant report

Variant	rs712864
Chromosome Location	chr1:223376673-223376674
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10047135	1.00[AMR][1000 genomes]
rs1640862	1.00[ASW][hapmap]
rs17163736	1.00[AMR][1000 genomes]
rs2160153	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2430406	1.00[AMR][1000 genomes]
rs5744135	1.00[ASW][hapmap]
rs5744139	1.00[ASW][hapmap]
rs5744140	1.00[ASW][hapmap]
rs5744143	1.00[ASW][hapmap]
rs5744149	1.00[ASW][hapmap]
rs851148	1.00[ASW][hapmap]
rs851152	1.00[ASW][hapmap]
rs851159	1.00[ASW][hapmap]
rs851161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223371200-223389800	Weak transcription	Gastric	stomach
2	chr1:223375200-223376800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr1:223375600-223376800	Enhancers	Thymus	Thymus
4	chr1:223375600-223378600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:223375800-223376800	Weak transcription	Esophagus	oesophagus
6	chr1:223376200-223378200	Enhancers	Fetal Thymus	thymus
7	chr1:223376400-223377000	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:223376400-223377200	Enhancers	Fetal Heart	heart
9	chr1:223376600-223376800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:223376600-223376800	Enhancers	Right Atrium	heart
11	chr1:223376600-223376800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
12	chr1:223376600-223377400	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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