Variant report

Variant	rs7128806
Chromosome Location	chr11:71279377-71279378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3AK20	chr11:71279254-71280325	MCF-7	breast:	n/a	n/a
2	GATA3	chr11:71279246-71280070	MCF-7	breast:	n/a	chr11:71279443-71279453
3	CTCF	chr11:71279355-71279463	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71278406..71279386-chr11:71291430..71292089,2	MCF-7	breast:
2	chr11:71278628..71280477-chr11:71289049..71291000,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248903	TF binding region
ENSG00000249387	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10751114	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs10792770	0.82[AMR][1000 genomes]
rs10792776	0.82[AMR][1000 genomes]
rs10792777	0.82[AMR][1000 genomes]
rs10792778	0.82[AMR][1000 genomes]
rs10898276	0.88[CEU][hapmap]
rs10898282	0.92[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes]
rs10898286	0.82[AMR][1000 genomes]
rs10898288	0.82[AMR][1000 genomes]
rs10898289	0.82[AMR][1000 genomes]
rs10898290	0.81[AMR][1000 genomes]
rs10898295	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11234102	0.88[CEU][hapmap]
rs11234149	0.80[AMR][1000 genomes]
rs11234164	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11604725	0.82[AMR][1000 genomes]
rs11605448	0.91[CEU][hapmap];0.91[JPT][hapmap]
rs12792437	0.80[AMR][1000 genomes]
rs17363672	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2663	0.91[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes]
rs4129753	0.82[AMR][1000 genomes]
rs4129754	0.82[AMR][1000 genomes]
rs7358341	0.82[AMR][1000 genomes]
rs7926544	0.91[CEU][hapmap];0.86[JPT][hapmap]
rs7930224	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7941700	0.88[CEU][hapmap];0.83[JPT][hapmap]
rs7943893	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv468632	chr11:71200320-71289089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv555402	chr11:71200320-71289089	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3372246	chr11:71223101-71435819	Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv825988	chr11:71277262-71294289	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv975200	chr11:71277624-71280675	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv975851	chr11:71278888-71295301	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71277200-71280400	Enhancers	Adipose Nuclei	Adipose
2	chr11:71277400-71279800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:71277600-71279800	Weak transcription	Left Ventricle	heart
4	chr11:71277600-71280400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:71277600-71281600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:71277600-71282800	Weak transcription	Fetal Intestine Small	intestine
7	chr11:71277600-71290400	Weak transcription	Right Atrium	heart
8	chr11:71278000-71279800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:71278200-71281600	Weak transcription	Spleen	Spleen
10	chr11:71278400-71279800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:71278800-71279400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr11:71278800-71279600	Bivalent Enhancer	HepG2	liver
13	chr11:71279000-71279400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:71279000-71280200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:71279000-71280600	Enhancers	Fetal Muscle Leg	muscle
16	chr11:71279000-71281200	Enhancers	Fetal Stomach	stomach
17	chr11:71279200-71279600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr11:71279200-71280400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links