Variant report

Variant	rs71293979
Chromosome Location	chr15:62140283-62140284
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:62139945..62141808-chr15:62207864..62210759,2	K562	blood:

Variant related genes	Relation type
ENSG00000129003	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7166555	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904284	chr15:62123600-62243197	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv521334	chr15:62129809-62340126	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv527451	chr15:62129809-62340126	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62132400-62159000	Weak transcription	HSMM	muscle
2	chr15:62132400-62171200	Weak transcription	HMEC	breast
3	chr15:62132800-62146600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:62134000-62144200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr15:62135000-62161600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr15:62136800-62150000	Weak transcription	HSMMtube	muscle
7	chr15:62137200-62144800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:62137400-62143400	Weak transcription	Adipose Nuclei	Adipose
9	chr15:62137400-62145400	Weak transcription	Liver	Liver
10	chr15:62138400-62143200	Weak transcription	Primary T cells from cord blood	blood
11	chr15:62138800-62142600	Weak transcription	Left Ventricle	heart
12	chr15:62138800-62184200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:62139200-62143400	Weak transcription	Primary B cells from cord blood	blood
14	chr15:62139200-62144000	Weak transcription	Lung	lung
15	chr15:62139200-62146000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr15:62139200-62146600	Weak transcription	Pancreas	Pancrea
17	chr15:62139200-62182200	Weak transcription	Brain Substantia Nigra	brain
18	chr15:62139400-62143200	Weak transcription	Fetal Intestine Small	intestine
19	chr15:62139400-62154800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:62139600-62142000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:62139600-62143600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:62139600-62145400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:62139800-62185200	Weak transcription	NHLF	lung
24	chr15:62140000-62143200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr15:62140000-62143200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr15:62140000-62143200	Weak transcription	NHDF-Ad	bronchial
27	chr15:62140000-62144000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:62140000-62184800	Weak transcription	Right Ventricle	heart
29	chr15:62140200-62140400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr15:62140200-62180000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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