Variant report

Variant	rs7130027
Chromosome Location	chr11:7994589-7994590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr11:7994527-7995174	SK-N-SH	brain:	n/a	n/a
2	GATA3	chr11:7994459-7995052	SK-N-SH	brain:	n/a	n/a
3	PBX3	chr11:7994465-7994927	SK-N-SH	brain:	n/a	n/a
4	TCF12	chr11:7994445-7995147	SK-N-SH	brain:	n/a	n/a
5	JUND	chr11:7994580-7995074	SK-N-SH	brain:	n/a	n/a
6	PBX3	chr11:7994531-7994999	SK-N-SH	brain:	n/a	n/a
7	EP300	chr11:7994497-7995094	SK-N-SH	brain:	n/a	n/a
8	GATA3	chr11:7994527-7995175	SK-N-SH	brain:	n/a	n/a
9	TCF12	chr11:7994454-7995075	SK-N-SH	brain:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NLRP10-2	chr11:7994198-7994613	l_428_chr11:7989430-7994613_testes

Variant related genes	Relation type
COX6CP5	TF binding region

rs_ID	r²[population]
rs10839952	0.97[ASN][1000 genomes]
rs11041689	0.97[ASN][1000 genomes]
rs11041690	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1606069	0.95[ASN][1000 genomes]
rs2136906	0.95[ASN][1000 genomes]

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:7987400-7998800	Weak transcription	NH-A	brain
2	chr11:7989200-7996400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:7990000-7997400	Weak transcription	NHLF	lung
4	chr11:7990000-7998200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:7990200-7998000	Weak transcription	Placenta	Placenta
6	chr11:7990600-7996200	Weak transcription	NHEK	skin
7	chr11:7991600-7998600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:7992000-7996200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:7992000-7996400	Weak transcription	HSMMtube	muscle
10	chr11:7992000-7998800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:7992200-7996200	Weak transcription	HMEC	breast
12	chr11:7992200-7996400	Weak transcription	HSMM	muscle
13	chr11:7992400-7996200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:7992400-7996400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:7992400-7998800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:7992400-7998800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:7992800-7999000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:7993200-7995200	Enhancers	Osteobl	bone
19	chr11:7993200-7998800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:7993600-7995000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:7993800-7996600	Weak transcription	NHDF-Ad	bronchial
22	chr11:7994000-7994600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:7994000-7994600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr11:7994000-7995200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr11:7994200-7994600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:7994400-7994800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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