Variant report

Variant	rs2136906
Chromosome Location	chr11:7974866-7974867
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10839952	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.97[ASN][1000 genomes]
rs11041689	0.97[ASN][1000 genomes]
rs11041690	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12417944	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12420107	0.93[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1606069	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56071931	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66473380	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67181930	0.86[EUR][1000 genomes]
rs67876487	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7130027	0.95[ASN][1000 genomes]
rs73412938	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73412945	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2136906	FLJ46111	cis	parietal	SCAN
rs2136906	OR51T1	cis	parietal	SCAN
rs2136906	LOC339799	trans	multi-tissue	Pritchard
rs2136906	NRIP3	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:7966800-7982800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:7967400-7981600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:7969800-7985800	Weak transcription	HSMMtube	muscle
4	chr11:7973200-7983000	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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