Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119485457..119487077-chr11:119490067..119492945,2	K562	blood:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10892420	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11217344	0.81[EUR][1000 genomes]
rs12797305	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12798473	0.94[EUR][1000 genomes]
rs1567376	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1567377	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1567378	0.90[EUR][1000 genomes]
rs2271249	0.87[EUR][1000 genomes]
rs2271250	0.87[EUR][1000 genomes]
rs3751020	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4328225	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4367956	0.96[EUR][1000 genomes]
rs4499013	0.88[ASN][1000 genomes]
rs4500497	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4514434	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4519102	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4581455	0.91[EUR][1000 genomes]
rs4936488	0.87[EUR][1000 genomes]
rs4938691	0.86[EUR][1000 genomes]
rs4938692	0.95[EUR][1000 genomes]
rs4938693	0.95[EUR][1000 genomes]
rs4938694	0.95[EUR][1000 genomes]
rs4938695	0.95[EUR][1000 genomes]
rs6589766	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7117705	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935369	0.91[EUR][1000 genomes]
rs7935488	0.91[EUR][1000 genomes]
rs7943818	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7949154	0.91[EUR][1000 genomes]
rs7951065	0.94[EUR][1000 genomes]
rs7951484	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv898419	chr11:119488646-119518006	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv898420	chr11:119488646-119541332	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119488600-119494600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:119488800-119494600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:119489000-119493200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:119489000-119493400	Weak transcription	Brain Anterior Caudate	brain
5	chr11:119489200-119494200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr11:119489200-119494600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:119489400-119493400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:119489400-119494400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:119489600-119495200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:119489600-119496200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:119489800-119493200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:119489800-119493400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:119489800-119494400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:119489800-119496000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:119490600-119493200	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:119490600-119493200	Weak transcription	Brain Substantia Nigra	brain

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