Variant report

Variant	rs7951484
Chromosome Location	chr11:119495527-119495528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119367442..119369349-chr11:119494053..119496718,2	K562	blood:
2	chr11:119352030..119353608-chr11:119494198..119496133,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10750161	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10790323	0.86[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10790324	0.86[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10892420	0.84[EUR][1000 genomes]
rs11217357	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11217358	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12797305	0.98[EUR][1000 genomes]
rs12798473	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1355191	0.87[CEU][hapmap]
rs1567377	0.86[EUR][1000 genomes]
rs1567378	0.87[EUR][1000 genomes]
rs2271249	0.85[EUR][1000 genomes]
rs2271250	0.85[EUR][1000 genomes]
rs3751020	0.84[EUR][1000 genomes]
rs4328225	0.84[EUR][1000 genomes]
rs4367956	0.83[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4499013	0.82[CHB][hapmap]
rs4500497	0.93[EUR][1000 genomes]
rs4514434	0.91[CEU][hapmap];0.82[CHB][hapmap];0.95[EUR][1000 genomes]
rs4519102	0.96[EUR][1000 genomes]
rs4581455	0.88[EUR][1000 genomes]
rs4582984	0.86[CEU][hapmap];0.81[EUR][1000 genomes]
rs4936488	0.85[EUR][1000 genomes]
rs4938691	0.84[EUR][1000 genomes]
rs4938692	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4938693	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4938694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4938695	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6589766	0.80[CEU][hapmap];0.89[EUR][1000 genomes]
rs7116091	0.81[EUR][1000 genomes]
rs7117705	0.95[EUR][1000 genomes]
rs7130031	0.95[EUR][1000 genomes]
rs7934906	0.82[ASN][1000 genomes]
rs7935369	0.90[EUR][1000 genomes]
rs7935488	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7943818	0.84[EUR][1000 genomes]
rs7949154	0.90[EUR][1000 genomes]
rs7951065	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv898419	chr11:119488646-119518006	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv898420	chr11:119488646-119541332	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119489600-119496200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr11:119489800-119496000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:119493400-119496400	Enhancers	Fetal Muscle Leg	muscle
4	chr11:119493400-119498600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:119493600-119495800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:119493800-119498000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr11:119493800-119501200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr11:119494200-119496600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:119494200-119498200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:119494200-119498400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:119494400-119497800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
12	chr11:119494400-119498200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr11:119494400-119502800	Weak transcription	Spleen	Spleen
14	chr11:119494600-119495800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:119494600-119496200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:119494600-119498000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:119495000-119496000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:119495000-119498600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:119495000-119499400	Bivalent Enhancer	HepG2	liver
20	chr11:119495200-119495600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:119495200-119496000	Enhancers	Esophagus	oesophagus
22	chr11:119495200-119496800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr11:119495200-119498000	Enhancers	Adipose Nuclei	Adipose
24	chr11:119495200-119498200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr11:119495200-119498400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:119495400-119497000	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr11:119495400-119498200	Enhancers	HUES64 Cell Line	embryonic stem cell

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