Variant report

Variant	rs1355191
Chromosome Location	chr11:119496472-119496473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119367442..119369349-chr11:119494053..119496718,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10892421	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10892422	0.82[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4354701	0.80[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4499013	0.80[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4514433	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4514434	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs7928238	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7934906	0.86[EUR][1000 genomes]
rs7951484	0.87[CEU][hapmap]
rs871800	0.82[CHB][hapmap];0.89[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs884395	0.82[CHB][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv898419	chr11:119488646-119518006	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv898420	chr11:119488646-119541332	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1355191	VPS11	cis	parietal	SCAN

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119493400-119498600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:119493800-119498000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr11:119493800-119501200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr11:119494200-119496600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:119494200-119498200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:119494200-119498400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:119494400-119497800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr11:119494400-119498200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr11:119494400-119502800	Weak transcription	Spleen	Spleen
10	chr11:119494600-119498000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:119495000-119498600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:119495000-119499400	Bivalent Enhancer	HepG2	liver
13	chr11:119495200-119496800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr11:119495200-119498000	Enhancers	Adipose Nuclei	Adipose
15	chr11:119495200-119498200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:119495200-119498400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:119495400-119497000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr11:119495400-119498200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr11:119495600-119498000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:119495800-119497600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
21	chr11:119496000-119496600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:119496000-119496600	Weak transcription	Esophagus	oesophagus
23	chr11:119496000-119496800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:119496000-119497000	Bivalent Enhancer	NHDF-Ad	bronchial
25	chr11:119496000-119497000	Bivalent Enhancer	Osteobl	bone
26	chr11:119496000-119497400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr11:119496000-119497400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:119496000-119497600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:119496000-119498200	Bivalent Enhancer	Placenta	Placenta
30	chr11:119496000-119498200	Enhancers	HSMM	muscle
31	chr11:119496000-119498600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:119496000-119499000	Bivalent Enhancer	Fetal Stomach	stomach
33	chr11:119496200-119497000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr11:119496200-119497400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr11:119496200-119497800	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr11:119496200-119497800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:119496200-119498200	Enhancers	HSMMtube	muscle
38	chr11:119496400-119496600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr11:119496400-119497200	Enhancers	Fetal Lung	lung
40	chr11:119496400-119497400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:119496400-119497400	Bivalent Enhancer	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links