Variant report

Variant	rs10892421
Chromosome Location	chr11:119498403-119498404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10892422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12797305	0.80[ASN][1000 genomes]
rs1355191	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4354701	0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4499013	0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4514433	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4514434	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7928238	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7934906	0.83[EUR][1000 genomes]
rs871800	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs884395	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv898419	chr11:119488646-119518006	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv898420	chr11:119488646-119541332	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119493400-119498600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:119493800-119501200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr11:119494400-119502800	Weak transcription	Spleen	Spleen
4	chr11:119495000-119498600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:119495000-119499400	Bivalent Enhancer	HepG2	liver
6	chr11:119496000-119498600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:119496000-119499000	Bivalent Enhancer	Fetal Stomach	stomach
8	chr11:119496600-119498800	Weak transcription	Right Atrium	heart
9	chr11:119497400-119498600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr11:119497400-119502200	Enhancers	Fetal Muscle Leg	muscle
11	chr11:119497600-119500200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:119498000-119500200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:119498000-119500400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:119498000-119501200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:119498200-119500200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:119498200-119500200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:119498200-119503800	Weak transcription	HSMMtube	muscle
18	chr11:119498200-119510400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:119498400-119500000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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