Variant report

Variant	rs7934906
Chromosome Location	chr11:119488133-119488134
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10790315	0.80[ASN][1000 genomes]
rs10790316	0.80[ASN][1000 genomes]
rs10790317	0.80[ASN][1000 genomes]
rs10892413	0.80[ASN][1000 genomes]
rs10892415	0.80[ASN][1000 genomes]
rs10892421	0.83[EUR][1000 genomes]
rs11608077	0.80[ASN][1000 genomes]
rs12798473	0.82[ASN][1000 genomes]
rs1355191	0.86[EUR][1000 genomes]
rs2271249	0.82[ASN][1000 genomes]
rs2271250	0.82[ASN][1000 genomes]
rs4354701	0.96[EUR][1000 genomes]
rs4367956	0.86[ASN][1000 genomes]
rs4499013	0.96[EUR][1000 genomes]
rs4514433	0.93[EUR][1000 genomes]
rs4581455	0.82[ASN][1000 genomes]
rs4936488	0.82[ASN][1000 genomes]
rs4938692	0.81[ASN][1000 genomes]
rs4938693	0.80[ASN][1000 genomes]
rs4938694	0.81[ASN][1000 genomes]
rs4938695	0.81[ASN][1000 genomes]
rs7121550	0.80[ASN][1000 genomes]
rs7928238	0.96[EUR][1000 genomes]
rs7935369	0.82[ASN][1000 genomes]
rs7935488	0.84[ASN][1000 genomes]
rs7949154	0.84[ASN][1000 genomes]
rs7951065	0.82[ASN][1000 genomes]
rs7951484	0.82[ASN][1000 genomes]
rs871800	0.95[EUR][1000 genomes]
rs884395	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119482600-119488600	Weak transcription	Right Atrium	heart
2	chr11:119485200-119489600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:119485400-119488600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:119485400-119489800	Enhancers	HUVEC	blood vessel
5	chr11:119485400-119490400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:119485600-119488200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:119485600-119489000	Enhancers	Adipose Nuclei	Adipose
8	chr11:119485800-119488600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:119485800-119488800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:119485800-119489000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:119485800-119489200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:119485800-119489400	Enhancers	NH-A	brain
13	chr11:119486000-119488200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:119486200-119489200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr11:119486400-119489000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr11:119486600-119489200	Enhancers	Placenta	Placenta
17	chr11:119486800-119489000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:119486800-119489200	Enhancers	Fetal Muscle Leg	muscle
19	chr11:119486800-119489400	Enhancers	HepG2	liver
20	chr11:119487000-119489200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:119487200-119488600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:119487200-119489000	Weak transcription	Stomach Mucosa	stomach
23	chr11:119487400-119488200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr11:119487600-119488200	Enhancers	K562	blood
25	chr11:119487600-119488400	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr11:119487600-119489800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:119487800-119488200	Enhancers	Brain Substantia Nigra	brain
28	chr11:119487800-119488400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:119487800-119488600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:119487800-119488800	Weak transcription	NHLF	lung
31	chr11:119487800-119489000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr11:119487800-119489000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:119487800-119489200	Flanking Active TSS	Brain Hippocampus Middle	brain
34	chr11:119487800-119489800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:119488000-119488200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
36	chr11:119488000-119488200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:119488000-119488200	Enhancers	Brain Anterior Caudate	brain
38	chr11:119488000-119488800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
39	chr11:119488000-119488800	Enhancers	Fetal Muscle Trunk	muscle
40	chr11:119488000-119488800	Enhancers	Lung	lung
41	chr11:119488000-119489000	Flanking Active TSS	Brain Angular Gyrus	brain
42	chr11:119488000-119489000	Flanking Active TSS	Brain Cingulate Gyrus	brain
43	chr11:119488000-119489200	Bivalent Enhancer	Fetal Lung	lung
44	chr11:119488000-119489400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr11:119488000-119489400	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr11:119488000-119489600	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr11:119488000-119489600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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