Variant report

Variant	rs7130968
Chromosome Location	chr11:77035993-77035994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77028301..77030747-chr11:77034393..77036479,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2123632	0.85[AMR][1000 genomes]
rs2250639	0.85[YRI][hapmap]
rs2250647	0.83[YRI][hapmap]
rs2602470	0.82[AFR][1000 genomes]
rs2844337	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs57111053	0.85[AMR][1000 genomes]
rs57497719	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59348236	0.85[AMR][1000 genomes]
rs61685578	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7109645	0.94[YRI][hapmap]
rs7930679	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7941675	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77025400-77037600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:77027400-77043000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:77027600-77043000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:77028000-77068400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:77028200-77066000	Weak transcription	Fetal Kidney	kidney
6	chr11:77028400-77043000	Weak transcription	Fetal Lung	lung
7	chr11:77030400-77043000	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:77030600-77086800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:77030800-77036800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:77030800-77046800	Weak transcription	Small Intestine	intestine
11	chr11:77030800-77054200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:77031200-77043000	Weak transcription	Colonic Mucosa	Colon
13	chr11:77031400-77036200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:77031400-77037200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:77031400-77037600	Strong transcription	Primary T cells from cord blood	blood
16	chr11:77031600-77037800	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr11:77031600-77046600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr11:77031600-77066400	Weak transcription	Gastric	stomach
19	chr11:77031600-77073800	Weak transcription	Spleen	Spleen
20	chr11:77031800-77036000	Weak transcription	HMEC	breast
21	chr11:77031800-77070400	Weak transcription	Fetal Brain Male	brain
22	chr11:77032000-77037600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:77032000-77037800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:77032000-77037800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr11:77032000-77038000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:77032000-77038000	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr11:77032000-77038000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr11:77032200-77037000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:77032200-77037800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:77032200-77066400	Weak transcription	Lung	lung
31	chr11:77032400-77037800	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr11:77032400-77043000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:77032600-77037600	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr11:77032600-77037800	Strong transcription	Placenta	Placenta
35	chr11:77032600-77043200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:77032600-77046200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr11:77032800-77037800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:77033000-77036400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:77033000-77037800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:77033000-77038000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:77033200-77036000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr11:77033200-77037800	Strong transcription	Fetal Stomach	stomach
43	chr11:77033200-77037800	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr11:77033400-77037600	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr11:77033400-77037600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr11:77033400-77067200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr11:77033400-77090400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr11:77033600-77046800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr11:77033800-77036200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr11:77033800-77037200	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links