Variant report

Variant	rs7930679
Chromosome Location	chr11:77029052-77029053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77028301..77030747-chr11:77034393..77036479,2	K562	blood:
2	chr11:77022420..77024730-chr11:77028021..77030394,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224829	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2123632	0.85[AMR][1000 genomes]
rs57111053	0.85[AMR][1000 genomes]
rs57497719	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59348236	0.85[AMR][1000 genomes]
rs61685578	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7130968	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7941675	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534515	chr11:76900813-77035769	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77020800-77032000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr11:77020800-77033200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:77021000-77032600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:77022400-77032000	Weak transcription	Fetal Intestine Large	intestine
5	chr11:77024800-77032000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:77025000-77033000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:77025000-77033000	Weak transcription	HSMMtube	muscle
8	chr11:77025000-77033000	Weak transcription	NHLF	lung
9	chr11:77025000-77033200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:77025000-77033200	Weak transcription	NHDF-Ad	bronchial
11	chr11:77025000-77033400	Weak transcription	NH-A	brain
12	chr11:77025000-77034200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:77025400-77033400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:77025400-77037600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:77027200-77029200	Enhancers	Ovary	ovary
16	chr11:77027400-77043000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:77027600-77033200	Weak transcription	Fetal Stomach	stomach
18	chr11:77027600-77043000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr11:77027800-77033400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:77028000-77032000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:77028000-77033000	Weak transcription	Fetal Intestine Small	intestine
22	chr11:77028000-77068400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr11:77028200-77033400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:77028200-77033400	Weak transcription	Liver	Liver
25	chr11:77028200-77066000	Weak transcription	Fetal Kidney	kidney
26	chr11:77028400-77043000	Weak transcription	Fetal Lung	lung

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