Variant report

Variant	rs7132142
Chromosome Location	chr12:106314045-106314046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106305287..106307682-chr12:106312157..106314624,3	MCF-7	breast:
2	chr12:106313628..106315997-chr12:106317077..106319893,2	K562	blood:
3	chr12:106312750..106314775-chr12:106316398..106318391,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10161316	0.87[ASN][1000 genomes]
rs10861533	0.88[ASN][1000 genomes]
rs11112794	0.86[ASN][1000 genomes]
rs12370011	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12425720	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12825669	0.83[EUR][1000 genomes]
rs2032767	0.90[ASN][1000 genomes]
rs2032768	0.89[ASN][1000 genomes]
rs34338597	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34439664	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56390523	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61940146	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7957583	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7974829	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106311000-106315800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr12:106312600-106317400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:106313000-106314800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr12:106313200-106316400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr12:106313400-106315200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:106313400-106315200	Enhancers	HMEC	breast
7	chr12:106313400-106316600	Enhancers	Fetal Heart	heart
8	chr12:106313400-106317200	Enhancers	NHEK	skin
9	chr12:106313600-106314600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr12:106313600-106315000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr12:106313600-106317200	Enhancers	Fetal Muscle Leg	muscle
12	chr12:106313800-106314200	Enhancers	Fetal Kidney	kidney
13	chr12:106313800-106314200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr12:106313800-106314400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:106313800-106314400	Enhancers	Brain Angular Gyrus	brain
16	chr12:106313800-106314400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr12:106313800-106314400	Enhancers	Right Ventricle	heart
18	chr12:106313800-106314600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr12:106313800-106314600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr12:106313800-106314600	Enhancers	Brain Cingulate Gyrus	brain
21	chr12:106313800-106314600	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr12:106313800-106314600	Enhancers	Brain Substantia Nigra	brain
23	chr12:106313800-106314600	Enhancers	Colon Smooth Muscle	Colon
24	chr12:106313800-106314600	Enhancers	Fetal Brain Male	brain
25	chr12:106313800-106314600	Enhancers	Fetal Lung	lung
26	chr12:106313800-106314600	Enhancers	Fetal Stomach	stomach
27	chr12:106313800-106314600	Enhancers	Psoas Muscle	Psoas
28	chr12:106313800-106314600	Enhancers	Rectal Smooth Muscle	rectum
29	chr12:106313800-106314600	Enhancers	Right Atrium	heart
30	chr12:106313800-106314600	Enhancers	HSMM	muscle
31	chr12:106313800-106315000	Enhancers	Brain Anterior Caudate	brain
32	chr12:106313800-106315000	Enhancers	Brain Germinal Matrix	brain
33	chr12:106313800-106315400	Enhancers	Brain Hippocampus Middle	brain
34	chr12:106313800-106315600	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr12:106314000-106314200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr12:106314000-106314400	Enhancers	Stomach Smooth Muscle	stomach
37	chr12:106314000-106314600	Enhancers	Fetal Brain Female	brain
38	chr12:106314000-106314600	Enhancers	Left Ventricle	heart
39	chr12:106314000-106314800	Enhancers	HSMMtube	muscle
40	chr12:106314000-106315800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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