Variant report

Variant	rs7974829
Chromosome Location	chr12:106299949-106299950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11112794	0.92[AMR][1000 genomes]
rs12370011	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12425720	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2032767	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2032768	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34338597	0.90[ASN][1000 genomes]
rs34439664	0.90[ASN][1000 genomes]
rs56390523	0.90[ASN][1000 genomes]
rs7132142	0.90[ASN][1000 genomes]
rs7957583	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106292800-106305600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:106293600-106300000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:106299600-106301200	Enhancers	Fetal Heart	heart
4	chr12:106299800-106300400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:106299800-106300400	Enhancers	Right Ventricle	heart
6	chr12:106299800-106300600	Strong transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links