Variant report

Variant	rs7132162
Chromosome Location	chr12:106692088-106692089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106681884..106684629-chr12:106690142..106692721,2	MCF-7	breast:
2	chr12:106637683..106639757-chr12:106691523..106693781,3	MCF-7	breast:
3	chr12:106691206..106693706-chr12:106694212..106695819,2	K562	blood:
4	chr12:106639341..106642339-chr12:106691161..106693366,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166046	Chromatin interaction
ENSG00000136026	Chromatin interaction
ENSG00000258355	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10778461	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10861571	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112933	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11112935	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12370430	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17218490	0.80[EUR][1000 genomes]
rs1983004	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56409465	0.88[EUR][1000 genomes]
rs58956914	0.83[EUR][1000 genomes]
rs7974338	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7980757	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794382	chr12:106679812-106699151	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106680000-106695200	Weak transcription	Right Atrium	heart
2	chr12:106683200-106693000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr12:106685800-106692800	Weak transcription	Fetal Intestine Large	intestine
4	chr12:106685800-106695200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr12:106685800-106695200	Weak transcription	Fetal Lung	lung
6	chr12:106688400-106693000	Weak transcription	K562	blood
7	chr12:106689000-106695800	Weak transcription	Lung	lung
8	chr12:106690200-106693000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:106690200-106695400	Weak transcription	NHLF	lung
10	chr12:106690400-106693000	Weak transcription	NHDF-Ad	bronchial
11	chr12:106690600-106692800	Weak transcription	Placenta	Placenta
12	chr12:106690600-106693000	Weak transcription	Left Ventricle	heart
13	chr12:106690600-106694600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr12:106690600-106694600	Weak transcription	HSMM	muscle
15	chr12:106690600-106695000	Weak transcription	NH-A	brain
16	chr12:106690600-106695200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr12:106690600-106695400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr12:106690800-106693000	Weak transcription	Stomach Mucosa	stomach
19	chr12:106690800-106694600	Weak transcription	Osteobl	bone
20	chr12:106690800-106694800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr12:106690800-106695000	Weak transcription	HMEC	breast
22	chr12:106690800-106695400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr12:106690800-106695400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr12:106691000-106694600	Weak transcription	A549	lung
25	chr12:106691200-106692200	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr12:106691200-106692200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr12:106691400-106692200	Enhancers	Primary B cells from cord blood	blood
28	chr12:106691600-106694400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr12:106691600-106694600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr12:106691800-106693000	Weak transcription	HepG2	liver
31	chr12:106691800-106694400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr12:106691800-106694400	Weak transcription	Hela-S3	cervix
33	chr12:106691800-106694600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr12:106691800-106694600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr12:106691800-106694600	Weak transcription	Fetal Heart	heart
36	chr12:106691800-106694600	Weak transcription	NHEK	skin
37	chr12:106691800-106694800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr12:106691800-106695000	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr12:106691800-106695000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr12:106691800-106695000	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr12:106691800-106695000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr12:106691800-106695200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr12:106691800-106695200	Weak transcription	Esophagus	oesophagus
44	chr12:106691800-106695200	Weak transcription	GM12878-XiMat	blood
45	chr12:106691800-106695400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr12:106692000-106694400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr12:106692000-106694600	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr12:106692000-106694600	Weak transcription	Primary B cells from peripheral blood	blood
49	chr12:106692000-106694600	Weak transcription	Primary T cells from cord blood	blood
50	chr12:106692000-106694600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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