Variant report

Variant	rs11112935
Chromosome Location	chr12:106708656-106708657
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106696710..106704900-chr12:106706895..106711407,9	MCF-7	breast:
2	chr12:106707540..106710931-chr12:106711659..106714739,4	K562	blood:

Variant related genes	Relation type
ENSG00000136026	Chromatin interaction
ENSG00000166046	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10778461	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10861571	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11112933	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11112940	0.82[EUR][1000 genomes]
rs11112942	0.82[EUR][1000 genomes]
rs11112943	0.82[EUR][1000 genomes]
rs1134577	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12370430	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12422988	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12424952	0.83[EUR][1000 genomes]
rs17218490	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17284674	0.82[EUR][1000 genomes]
rs1921952	0.82[EUR][1000 genomes]
rs1983004	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28669886	0.82[EUR][1000 genomes]
rs2888888	0.82[EUR][1000 genomes]
rs56409465	0.85[EUR][1000 genomes]
rs58767490	0.80[EUR][1000 genomes]
rs58956914	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs60224628	0.82[EUR][1000 genomes]
rs60839334	0.82[EUR][1000 genomes]
rs61940334	0.82[EUR][1000 genomes]
rs61940335	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7132162	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7132971	0.81[EUR][1000 genomes]
rs7961133	0.82[EUR][1000 genomes]
rs7974338	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7980757	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106698000-106709000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr12:106698400-106709800	Weak transcription	Fetal Lung	lung
3	chr12:106698600-106709600	Weak transcription	Brain Germinal Matrix	brain
4	chr12:106698800-106709200	Weak transcription	Fetal Thymus	thymus
5	chr12:106699600-106713800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr12:106699800-106708800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:106699800-106713200	Weak transcription	Esophagus	oesophagus
8	chr12:106699800-106718800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr12:106700600-106736000	Weak transcription	Stomach Mucosa	stomach
10	chr12:106701400-106708800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr12:106701400-106709400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr12:106703000-106722800	Weak transcription	Fetal Brain Male	brain
13	chr12:106703600-106714400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:106703600-106715800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr12:106703800-106718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr12:106704000-106716000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr12:106704200-106711400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr12:106704200-106715000	Weak transcription	HepG2	liver
19	chr12:106704200-106715400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr12:106704200-106715400	Weak transcription	NHDF-Ad	bronchial
21	chr12:106704200-106716800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr12:106704200-106729400	Weak transcription	NHLF	lung
23	chr12:106704200-106729800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr12:106704400-106712200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr12:106704600-106717600	Weak transcription	HSMM	muscle
26	chr12:106704600-106724400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr12:106704800-106709400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr12:106704800-106715200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr12:106704800-106726800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr12:106704800-106738800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr12:106705000-106708800	Weak transcription	Right Ventricle	heart
32	chr12:106705000-106708800	Weak transcription	Spleen	Spleen
33	chr12:106705000-106709000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr12:106705000-106709200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr12:106705000-106711200	Weak transcription	Aorta	Aorta
36	chr12:106705000-106711400	Weak transcription	Fetal Heart	heart
37	chr12:106705000-106714400	Weak transcription	HSMMtube	muscle
38	chr12:106705200-106710600	Weak transcription	Psoas Muscle	Psoas
39	chr12:106705200-106711200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr12:106705200-106715200	Weak transcription	Colonic Mucosa	Colon
41	chr12:106705200-106715200	Weak transcription	Gastric	stomach
42	chr12:106705200-106743400	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr12:106705400-106709400	Weak transcription	Fetal Kidney	kidney
44	chr12:106705400-106731600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr12:106705400-106743200	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr12:106705600-106708800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr12:106705600-106709000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr12:106705600-106709000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr12:106705800-106725400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr12:106706000-106710000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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