Variant report

Variant	rs17284674
Chromosome Location	chr12:106727491-106727492
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106713385..106715163-chr12:106725298..106728100,2	MCF-7	breast:
2	chr12:106726548..106729199-chr12:106751678..106754511,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000013503	Chromatin interaction

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs10047654	0.81[ASN][1000 genomes]
rs10507211	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10746059	0.85[ASN][1000 genomes]
rs10746060	0.81[ASN][1000 genomes]
rs10778464	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778466	0.81[ASN][1000 genomes]
rs10778468	0.81[ASN][1000 genomes]
rs10778470	0.81[ASN][1000 genomes]
rs10778471	0.81[ASN][1000 genomes]
rs10778473	0.81[ASN][1000 genomes]
rs10778474	0.81[ASN][1000 genomes]
rs10778475	0.81[ASN][1000 genomes]
rs10778478	0.81[ASN][1000 genomes]
rs10778480	0.81[ASN][1000 genomes]
rs10778481	0.81[ASN][1000 genomes]
rs10861571	0.96[CEU][hapmap]
rs10861577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10861578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10861579	0.88[ASN][1000 genomes]
rs10861580	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10861582	0.85[ASN][1000 genomes]
rs10861583	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10861585	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10861586	0.85[ASN][1000 genomes]
rs10861587	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10861588	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861589	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861590	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861591	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861592	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861593	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861594	1.00[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861597	0.92[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861598	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861599	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861601	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10861604	0.81[ASN][1000 genomes]
rs10861609	0.81[ASN][1000 genomes]
rs11112933	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11112935	0.82[EUR][1000 genomes]
rs11112940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112942	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112943	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112945	0.92[ASN][1000 genomes]
rs11112948	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112949	0.85[ASN][1000 genomes]
rs11112951	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11112952	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11112953	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11112957	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11112971	0.81[ASN][1000 genomes]
rs11112979	0.81[ASN][1000 genomes]
rs11112980	0.81[ASN][1000 genomes]
rs11112986	0.81[ASN][1000 genomes]
rs11112995	0.81[ASN][1000 genomes]
rs11113011	0.83[EUR][1000 genomes]
rs1134577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611252	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11611815	1.00[ASN][1000 genomes]
rs11615682	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11835357	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12298876	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12305705	0.81[ASN][1000 genomes]
rs12309708	0.81[ASN][1000 genomes]
rs12309758	0.81[ASN][1000 genomes]
rs12312915	0.81[ASN][1000 genomes]
rs12370430	1.00[CEU][hapmap]
rs12422988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12424952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17218490	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17285274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1921952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077730	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2243455	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2249837	0.96[YRI][hapmap]
rs2250108	0.96[YRI][hapmap]
rs2264757	0.83[YRI][hapmap]
rs2264762	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs2264814	0.90[YRI][hapmap]
rs2264815	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs2264816	0.82[AFR][1000 genomes]
rs28669886	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2888888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34955444	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3851632	0.81[ASN][1000 genomes]
rs3851633	0.81[ASN][1000 genomes]
rs4509864	0.92[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55689816	0.85[ASN][1000 genomes]
rs58297001	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58767490	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60224628	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60635749	0.81[ASN][1000 genomes]
rs60839334	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61940334	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61940335	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61940342	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61941917	0.81[ASN][1000 genomes]
rs61941922	0.81[ASN][1000 genomes]
rs61943670	0.96[ASN][1000 genomes]
rs61943672	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61943694	0.81[ASN][1000 genomes]
rs6539268	0.81[ASN][1000 genomes]
rs6539269	0.81[ASN][1000 genomes]
rs6539270	0.81[ASN][1000 genomes]
rs6539271	0.81[ASN][1000 genomes]
rs67911933	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7132744	0.82[ASN][1000 genomes]
rs7132971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7134615	0.81[ASN][1000 genomes]
rs7134881	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7135054	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7137445	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7139139	0.81[ASN][1000 genomes]
rs7139249	0.81[ASN][1000 genomes]
rs7297873	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7303873	0.81[ASN][1000 genomes]
rs7306012	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306277	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7306326	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7308541	0.81[ASN][1000 genomes]
rs7309020	0.81[ASN][1000 genomes]
rs7310703	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7311957	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7315549	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7961133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963213	0.81[ASN][1000 genomes]
rs7965520	0.81[ASN][1000 genomes]
rs7969743	0.81[ASN][1000 genomes]
rs7971581	0.81[ASN][1000 genomes]
rs7976305	0.81[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106700600-106736000	Weak transcription	Stomach Mucosa	stomach
2	chr12:106704200-106729400	Weak transcription	NHLF	lung
3	chr12:106704200-106729800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr12:106704800-106738800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:106705200-106743400	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr12:106705400-106731600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr12:106705400-106743200	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr12:106706000-106727800	Strong transcription	Placenta	Placenta
9	chr12:106707800-106738800	Strong transcription	Primary T helper cells PMA-I stimulated	--
10	chr12:106707800-106738800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr12:106708000-106728200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr12:106708000-106740600	Strong transcription	Primary T cells from cord blood	blood
13	chr12:106708000-106741000	Strong transcription	Primary B cells from peripheral blood	blood
14	chr12:106708400-106728000	Strong transcription	Thymus	Thymus
15	chr12:106710000-106729800	Weak transcription	Hela-S3	cervix
16	chr12:106712000-106732600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr12:106713400-106741600	Weak transcription	Small Intestine	intestine
18	chr12:106716400-106735400	Weak transcription	Right Atrium	heart
19	chr12:106716600-106729800	Weak transcription	HepG2	liver
20	chr12:106716800-106735400	Weak transcription	Esophagus	oesophagus
21	chr12:106716800-106736000	Weak transcription	Gastric	stomach
22	chr12:106717000-106729200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr12:106717000-106735600	Weak transcription	HSMMtube	muscle
24	chr12:106717800-106729800	Weak transcription	NHDF-Ad	bronchial
25	chr12:106719600-106735400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr12:106720200-106735400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr12:106720200-106736000	Weak transcription	Fetal Intestine Small	intestine
28	chr12:106720200-106736200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr12:106720400-106729800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr12:106720800-106730800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr12:106720800-106738200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr12:106721200-106731000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr12:106721400-106733600	Weak transcription	Fetal Heart	heart
34	chr12:106721800-106729800	Weak transcription	Fetal Lung	lung
35	chr12:106722000-106731000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr12:106722800-106735600	Weak transcription	Pancreas	Pancrea
37	chr12:106723200-106729000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr12:106723200-106738000	Weak transcription	Fetal Brain Male	brain
39	chr12:106723400-106735400	Weak transcription	Colonic Mucosa	Colon
40	chr12:106723400-106736000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr12:106723400-106736400	Weak transcription	Fetal Stomach	stomach
42	chr12:106723600-106728200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr12:106723600-106751000	Weak transcription	Fetal Kidney	kidney
44	chr12:106724000-106729000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr12:106724000-106736600	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr12:106724000-106742600	Strong transcription	Primary B cells from cord blood	blood
47	chr12:106724000-106751000	Weak transcription	Fetal Brain Female	brain
48	chr12:106724200-106729200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr12:106724200-106731000	Strong transcription	Brain Hippocampus Middle	brain
50	chr12:106724200-106736800	Weak transcription	Brain Germinal Matrix	brain

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