Variant report

Variant	rs7137445
Chromosome Location	chr12:106805886-106805887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106804038..106806221-chr12:106840299..106842123,2	MCF-7	breast:

Extended variants
information (count: 163 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:161)

rs_ID	r²[population]
rs10047654	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10507211	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10746059	0.80[ASN][1000 genomes]
rs10746060	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10778464	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10778465	0.88[ASN][1000 genomes]
rs10778466	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10778468	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10778469	0.88[ASN][1000 genomes]
rs10778470	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10778471	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10778473	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10778474	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10778475	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778476	0.88[ASN][1000 genomes]
rs10778477	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10778478	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778480	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778481	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861571	0.92[CEU][hapmap]
rs10861580	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10861581	0.80[ASN][1000 genomes]
rs10861582	0.80[ASN][1000 genomes]
rs10861583	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10861585	0.80[ASN][1000 genomes]
rs10861586	0.80[ASN][1000 genomes]
rs10861587	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10861588	1.00[CEU][hapmap]
rs10861589	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10861590	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861591	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861592	0.88[ASN][1000 genomes]
rs10861593	0.88[ASN][1000 genomes]
rs10861594	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861595	0.88[ASN][1000 genomes]
rs10861597	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861598	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861601	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10861604	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10861605	0.88[ASN][1000 genomes]
rs10861608	0.88[ASN][1000 genomes]
rs10861609	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861613	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11112933	0.89[CEU][hapmap]
rs11112940	0.92[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11112942	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11112943	0.92[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11112948	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11112949	0.80[ASN][1000 genomes]
rs11112951	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11112952	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11112953	0.80[ASN][1000 genomes]
rs11112956	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11112957	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11112961	0.84[ASN][1000 genomes]
rs11112971	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11112979	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11112980	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11112986	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11112990	0.88[ASN][1000 genomes]
rs11112991	0.88[ASN][1000 genomes]
rs11112992	0.88[ASN][1000 genomes]
rs11112993	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11112995	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11113003	0.88[ASN][1000 genomes]
rs11113004	0.88[ASN][1000 genomes]
rs11113009	0.88[ASN][1000 genomes]
rs11113011	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1134577	0.92[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11609315	0.88[ASN][1000 genomes]
rs11611176	0.88[ASN][1000 genomes]
rs11611252	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611815	0.81[ASN][1000 genomes]
rs11615682	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11835357	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11835362	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12298876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12305705	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12309708	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12309758	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12312915	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12322877	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12370430	0.88[CEU][hapmap]
rs12422988	0.92[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12423068	0.88[ASN][1000 genomes]
rs12424092	0.81[AFR][1000 genomes]
rs12424952	0.92[CEU][hapmap]
rs12425459	0.88[ASN][1000 genomes]
rs17038414	0.88[ASN][1000 genomes]
rs17218490	0.88[CEU][hapmap]
rs17221107	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17284674	0.92[CEU][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1921952	0.92[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2141774	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2141775	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2243455	0.81[ASN][1000 genomes]
rs2264758	0.81[AFR][1000 genomes]
rs2264759	0.89[AFR][1000 genomes]
rs2374606	0.88[ASN][1000 genomes]
rs2374610	0.84[ASN][1000 genomes]
rs28669886	0.81[ASN][1000 genomes]
rs2888888	0.92[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34955444	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3851631	0.88[ASN][1000 genomes]
rs3851632	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3851633	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4509864	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs55678155	0.88[ASN][1000 genomes]
rs55689816	0.80[ASN][1000 genomes]
rs58297001	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58767490	0.81[ASN][1000 genomes]
rs60224628	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60635749	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60839334	0.81[EUR][1000 genomes]
rs61940334	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61940335	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61940342	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61941917	1.00[ASN][1000 genomes]
rs61941918	0.88[ASN][1000 genomes]
rs61941920	0.88[ASN][1000 genomes]
rs61941921	0.88[ASN][1000 genomes]
rs61941922	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61941943	0.88[ASN][1000 genomes]
rs61941944	0.88[ASN][1000 genomes]
rs61943672	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61943690	0.88[ASN][1000 genomes]
rs61943693	0.84[ASN][1000 genomes]
rs61943694	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6539268	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6539269	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6539270	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6539271	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67911933	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67966244	0.88[ASN][1000 genomes]
rs7132971	0.92[CEU][hapmap];0.81[ASN][1000 genomes]
rs7134615	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7134881	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7135054	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7136098	0.84[ASN][1000 genomes]
rs7139139	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7139249	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297873	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7298062	0.81[AFR][1000 genomes]
rs7298462	0.80[ASN][1000 genomes]
rs7303873	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7306012	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7306277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306326	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7308541	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7309020	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7310703	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7311957	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7313040	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7315549	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7961133	0.92[CEU][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7963213	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7965520	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7969743	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7971581	1.00[ASN][1000 genomes]
rs7976305	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435035	chr12:106765277-107015325	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832510	chr12:106787730-106951140	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106753000-106811800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr12:106753000-106815400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr12:106764000-106821000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr12:106764400-106811800	Weak transcription	HUVEC	blood vessel
5	chr12:106767200-106808600	Weak transcription	NHDF-Ad	bronchial
6	chr12:106773000-106828000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr12:106773200-106808600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr12:106774400-106834000	Weak transcription	Small Intestine	intestine
9	chr12:106774600-106819000	Weak transcription	Right Ventricle	heart
10	chr12:106774800-106811800	Weak transcription	NHEK	skin
11	chr12:106776800-106821800	Weak transcription	Brain Angular Gyrus	brain
12	chr12:106777400-106808200	Weak transcription	Primary B cells from peripheral blood	blood
13	chr12:106779600-106821800	Weak transcription	Brain Substantia Nigra	brain
14	chr12:106782000-106810000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr12:106783600-106818800	Weak transcription	Fetal Heart	heart
16	chr12:106787000-106830200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr12:106787200-106808600	Weak transcription	NHLF	lung
18	chr12:106787600-106808400	Weak transcription	Psoas Muscle	Psoas
19	chr12:106787600-106856600	Weak transcription	GM12878-XiMat	blood
20	chr12:106787800-106852400	Weak transcription	Gastric	stomach
21	chr12:106787800-106852800	Weak transcription	Pancreas	Pancrea
22	chr12:106788000-106827200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr12:106789000-106808800	Weak transcription	HMEC	breast
24	chr12:106789000-106829800	Weak transcription	Brain Hippocampus Middle	brain
25	chr12:106789200-106807400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr12:106789200-106811800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr12:106789200-106821400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr12:106789400-106808200	Weak transcription	Fetal Kidney	kidney
29	chr12:106789400-106808400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr12:106789400-106808600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr12:106789400-106812400	Weak transcription	Brain Anterior Caudate	brain
32	chr12:106789400-106819000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr12:106789400-106821800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr12:106789600-106810400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr12:106790000-106819000	Weak transcription	Lung	lung
36	chr12:106790200-106808800	Weak transcription	HSMMtube	muscle
37	chr12:106790200-106811800	Weak transcription	HepG2	liver
38	chr12:106790400-106811800	Weak transcription	Adipose Nuclei	Adipose
39	chr12:106790400-106821000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr12:106790600-106808800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr12:106790800-106808200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr12:106791000-106807200	Weak transcription	Hela-S3	cervix
43	chr12:106791200-106808000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr12:106791600-106808400	Weak transcription	Primary B cells from cord blood	blood
45	chr12:106791800-106806400	Weak transcription	A549	lung
46	chr12:106791800-106808400	Weak transcription	Placenta	Placenta
47	chr12:106791800-106808600	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr12:106791800-106808600	Weak transcription	HSMM	muscle
49	chr12:106791800-106808800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr12:106791800-106808800	Weak transcription	Dnd41	blood

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