Variant report

Variant	rs11112948
Chromosome Location	chr12:106745195-106745196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106740945..106746236-chr12:106747854..106753428,6	MCF-7	breast:
2	chr12:106739203..106740891-chr12:106742866..106745239,2	K562	blood:
3	chr12:106739700..106741881-chr12:106744075..106745674,2	MCF-7	breast:
4	chr12:106739208..106741213-chr12:106743034..106745596,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000013503	Chromatin interaction

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10047654	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10507211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10746059	0.85[ASN][1000 genomes]
rs10746060	0.81[ASN][1000 genomes]
rs10778464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778466	0.81[ASN][1000 genomes]
rs10778468	0.81[ASN][1000 genomes]
rs10778470	0.81[ASN][1000 genomes]
rs10778471	0.81[ASN][1000 genomes]
rs10778473	0.81[ASN][1000 genomes]
rs10778474	0.81[ASN][1000 genomes]
rs10778475	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10778477	0.89[EUR][1000 genomes]
rs10778478	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10778480	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10778481	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861571	0.92[CEU][hapmap]
rs10861577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10861578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10861579	0.88[ASN][1000 genomes]
rs10861580	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10861582	0.85[ASN][1000 genomes]
rs10861583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10861585	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10861586	0.85[ASN][1000 genomes]
rs10861587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10861588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861589	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861592	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861593	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861594	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861597	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861598	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861599	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861601	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10861604	0.81[ASN][1000 genomes]
rs10861609	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861613	0.89[EUR][1000 genomes]
rs11112933	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs11112940	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112942	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112943	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112945	0.92[ASN][1000 genomes]
rs11112949	0.85[ASN][1000 genomes]
rs11112951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11112952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11112953	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11112956	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11112957	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11112971	0.81[ASN][1000 genomes]
rs11112979	0.81[ASN][1000 genomes]
rs11112980	0.81[ASN][1000 genomes]
rs11112986	0.81[ASN][1000 genomes]
rs11112995	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11113011	0.83[EUR][1000 genomes]
rs1134577	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611252	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11611815	1.00[ASN][1000 genomes]
rs11615682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11835357	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11835362	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12298876	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12305705	0.81[ASN][1000 genomes]
rs12309708	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12309758	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12312915	0.81[ASN][1000 genomes]
rs12322877	0.81[EUR][1000 genomes]
rs12370430	0.88[CEU][hapmap]
rs12422988	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12424952	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17218490	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17221107	0.89[EUR][1000 genomes]
rs17284674	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17285274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1921952	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2141775	0.84[EUR][1000 genomes]
rs2243455	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28669886	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2888888	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34955444	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3851632	0.81[ASN][1000 genomes]
rs3851633	0.81[ASN][1000 genomes]
rs4509864	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55689816	0.85[ASN][1000 genomes]
rs58297001	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58767490	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60224628	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60635749	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60839334	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61940334	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61940335	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61940342	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61941917	0.81[ASN][1000 genomes]
rs61941922	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61943670	0.96[ASN][1000 genomes]
rs61943672	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61943694	0.81[ASN][1000 genomes]
rs6539268	0.81[ASN][1000 genomes]
rs6539269	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6539270	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6539271	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67911933	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7132744	0.82[ASN][1000 genomes]
rs7132971	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7134615	0.81[ASN][1000 genomes]
rs7134881	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7135054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7137445	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7139139	0.81[ASN][1000 genomes]
rs7139249	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7297873	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7303873	0.81[ASN][1000 genomes]
rs7306012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306277	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7306326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7308541	0.81[ASN][1000 genomes]
rs7309020	0.81[ASN][1000 genomes]
rs7310703	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7311957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7313040	0.89[EUR][1000 genomes]
rs7315549	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7961133	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963213	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7965520	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7969743	0.81[ASN][1000 genomes]
rs7971581	0.81[ASN][1000 genomes]
rs7976305	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106723600-106751000	Weak transcription	Fetal Kidney	kidney
2	chr12:106724000-106751000	Weak transcription	Fetal Brain Female	brain
3	chr12:106735800-106751000	Weak transcription	Colonic Mucosa	Colon
4	chr12:106736200-106751400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:106736600-106751000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr12:106736800-106746600	Weak transcription	Pancreas	Pancrea
7	chr12:106736800-106751000	Weak transcription	Right Ventricle	heart
8	chr12:106737000-106751000	Weak transcription	Fetal Thymus	thymus
9	chr12:106737200-106750800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr12:106737200-106751000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr12:106737200-106751000	Weak transcription	Fetal Lung	lung
12	chr12:106737400-106750800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr12:106737400-106750800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr12:106737400-106751000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr12:106737600-106750800	Weak transcription	Fetal Intestine Small	intestine
16	chr12:106737600-106751000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr12:106737600-106751000	Weak transcription	Fetal Intestine Large	intestine
18	chr12:106737800-106750800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr12:106738400-106751000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr12:106738600-106750800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr12:106738600-106750800	Weak transcription	Fetal Heart	heart
22	chr12:106738800-106751000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr12:106739800-106751000	Weak transcription	Fetal Muscle Leg	muscle
24	chr12:106740200-106751000	Weak transcription	Fetal Stomach	stomach
25	chr12:106740400-106745200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr12:106740400-106746600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr12:106740400-106750400	Weak transcription	Liver	Liver
28	chr12:106740400-106750800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr12:106740400-106750800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr12:106740400-106751000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr12:106740400-106751000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr12:106740400-106751000	Weak transcription	HSMMtube	muscle
33	chr12:106740400-106751400	Weak transcription	Esophagus	oesophagus
34	chr12:106740400-106751400	Weak transcription	Lung	lung
35	chr12:106740400-106751400	Weak transcription	Spleen	Spleen
36	chr12:106740600-106750800	Weak transcription	Brain Hippocampus Middle	brain
37	chr12:106740600-106750800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr12:106740600-106751000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr12:106740600-106751400	Weak transcription	Left Ventricle	heart
40	chr12:106741000-106751000	Weak transcription	Primary B cells from peripheral blood	blood
41	chr12:106741000-106751000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr12:106741200-106745600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr12:106741200-106750800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr12:106741200-106751000	Weak transcription	Adipose Nuclei	Adipose
45	chr12:106741200-106751000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr12:106741200-106751000	Weak transcription	Colon Smooth Muscle	Colon
47	chr12:106741200-106751200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr12:106741200-106751200	Weak transcription	Placenta	Placenta
49	chr12:106741400-106750600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr12:106742400-106751000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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