Variant report

Variant	rs11112956
Chromosome Location	chr12:106767481-106767482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106750494..106753416-chr12:106766479..106769479,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000013503	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10047654	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10507211	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10746059	0.87[AFR][1000 genomes]
rs10778464	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10778475	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10778477	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10778478	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10778480	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10778481	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10861580	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10861581	0.94[AFR][1000 genomes]
rs10861582	0.94[AFR][1000 genomes]
rs10861583	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10861586	0.94[AFR][1000 genomes]
rs10861587	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10861589	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10861590	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10861591	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10861592	0.93[AFR][1000 genomes]
rs10861594	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10861597	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10861598	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10861599	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10861609	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10861613	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11112940	0.80[EUR][1000 genomes]
rs11112942	0.80[EUR][1000 genomes]
rs11112943	0.80[EUR][1000 genomes]
rs11112948	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11112951	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11112952	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11112957	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11112995	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11113011	0.84[EUR][1000 genomes]
rs1134577	0.80[EUR][1000 genomes]
rs11611252	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11615682	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11835357	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11835362	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12298876	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12309708	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12309758	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12322877	0.82[EUR][1000 genomes]
rs12422988	0.80[EUR][1000 genomes]
rs17221107	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1921952	0.80[EUR][1000 genomes]
rs2141775	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2244958	0.87[AFR][1000 genomes]
rs2254755	0.87[AFR][1000 genomes]
rs2888888	0.80[EUR][1000 genomes]
rs34955444	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4509864	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58297001	0.92[EUR][1000 genomes]
rs60224628	0.80[EUR][1000 genomes]
rs60635749	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60839334	0.80[EUR][1000 genomes]
rs61940334	0.80[EUR][1000 genomes]
rs61940335	0.80[EUR][1000 genomes]
rs61940342	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61941922	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61943672	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6539269	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6539270	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6539271	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67911933	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7134881	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7135054	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7137445	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7139249	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7297873	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7306012	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7306277	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7306326	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7310703	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7311957	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7313040	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7315549	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7961133	0.80[EUR][1000 genomes]
rs7963213	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7965520	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7976305	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3435035	chr12:106765277-107015325	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106752400-106775400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:106752400-106791600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:106752600-106781800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:106752800-106772200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr12:106752800-106775800	Weak transcription	Aorta	Aorta
6	chr12:106753000-106772200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr12:106753000-106772800	Weak transcription	Right Ventricle	heart
8	chr12:106753000-106774000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:106753000-106775800	Weak transcription	Brain Substantia Nigra	brain
10	chr12:106753000-106788800	Weak transcription	Thymus	Thymus
11	chr12:106753000-106791600	Weak transcription	Esophagus	oesophagus
12	chr12:106753000-106793200	Weak transcription	Colon Smooth Muscle	Colon
13	chr12:106753000-106811800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr12:106753000-106815400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr12:106753200-106773000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr12:106753200-106774600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr12:106753600-106774600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr12:106753800-106774200	Weak transcription	Small Intestine	intestine
19	chr12:106754000-106769800	Weak transcription	Gastric	stomach
20	chr12:106754000-106774200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr12:106754000-106775800	Weak transcription	Brain Germinal Matrix	brain
22	chr12:106754200-106772200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr12:106754400-106775800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr12:106754800-106778400	Weak transcription	Stomach Mucosa	stomach
25	chr12:106755000-106768200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr12:106755000-106769600	Weak transcription	Lung	lung
27	chr12:106755000-106784600	Weak transcription	Pancreas	Pancrea
28	chr12:106755000-106789000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr12:106755400-106796400	Weak transcription	Spleen	Spleen
30	chr12:106757200-106773000	Weak transcription	Fetal Heart	heart
31	chr12:106758600-106769800	Weak transcription	Stomach Smooth Muscle	stomach
32	chr12:106758600-106775800	Weak transcription	HSMMtube	muscle
33	chr12:106761600-106770000	Weak transcription	Placenta	Placenta
34	chr12:106762200-106774200	Weak transcription	Psoas Muscle	Psoas
35	chr12:106763200-106770800	Strong transcription	Fetal Muscle Leg	muscle
36	chr12:106763600-106772000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr12:106763600-106772800	Weak transcription	Brain Angular Gyrus	brain
38	chr12:106763600-106774000	Weak transcription	Colonic Mucosa	Colon
39	chr12:106763800-106781400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr12:106763800-106783400	Weak transcription	Fetal Brain Male	brain
41	chr12:106764000-106769400	Weak transcription	Ovary	ovary
42	chr12:106764000-106769800	Weak transcription	Fetal Kidney	kidney
43	chr12:106764000-106776200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr12:106764000-106821000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr12:106764200-106768200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr12:106764200-106768800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr12:106764200-106769400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr12:106764200-106769600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr12:106764200-106770000	Weak transcription	Osteobl	bone
50	chr12:106764200-106772000	Weak transcription	Brain Inferior Temporal Lobe	brain

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