Variant report

Variant	rs11112943
Chromosome Location	chr12:106726305-106726306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106713385..106715163-chr12:106725298..106728100,2	MCF-7	breast:
2	chr12:106715687..106717265-chr12:106725114..106726618,2	MCF-7	breast:

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10047654	0.81[ASN][1000 genomes]
rs10507211	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10746059	0.85[ASN][1000 genomes]
rs10746060	0.81[ASN][1000 genomes]
rs10778464	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778466	0.81[ASN][1000 genomes]
rs10778468	0.81[ASN][1000 genomes]
rs10778470	0.81[ASN][1000 genomes]
rs10778471	0.81[ASN][1000 genomes]
rs10778473	0.81[ASN][1000 genomes]
rs10778474	0.81[ASN][1000 genomes]
rs10778475	0.81[ASN][1000 genomes]
rs10778478	0.81[ASN][1000 genomes]
rs10778480	0.81[ASN][1000 genomes]
rs10778481	0.81[ASN][1000 genomes]
rs10861571	0.92[CEU][hapmap]
rs10861577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10861578	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10861579	0.88[ASN][1000 genomes]
rs10861580	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861581	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10861582	0.85[ASN][1000 genomes]
rs10861583	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10861585	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10861586	0.85[ASN][1000 genomes]
rs10861587	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10861588	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861589	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861590	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861591	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861592	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861593	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861594	1.00[CEU][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861597	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861598	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861599	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10861601	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10861604	0.81[ASN][1000 genomes]
rs10861609	0.81[ASN][1000 genomes]
rs11112933	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs11112935	0.82[EUR][1000 genomes]
rs11112940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112945	0.92[ASN][1000 genomes]
rs11112948	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112949	0.85[ASN][1000 genomes]
rs11112951	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11112952	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11112953	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11112956	0.80[EUR][1000 genomes]
rs11112957	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11112971	0.81[ASN][1000 genomes]
rs11112979	0.81[ASN][1000 genomes]
rs11112980	0.81[ASN][1000 genomes]
rs11112986	0.81[ASN][1000 genomes]
rs11112995	0.81[ASN][1000 genomes]
rs11113011	0.83[EUR][1000 genomes]
rs1134577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611252	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11611815	1.00[ASN][1000 genomes]
rs11615682	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11835357	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12298876	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12305705	0.81[ASN][1000 genomes]
rs12309708	0.81[ASN][1000 genomes]
rs12309758	0.81[ASN][1000 genomes]
rs12312915	0.81[ASN][1000 genomes]
rs12370430	0.96[CEU][hapmap]
rs12422988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12424952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17218490	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17284674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17285274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1921952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077730	0.89[YRI][hapmap]
rs2243455	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2249837	0.93[YRI][hapmap];0.85[AFR][1000 genomes]
rs2250108	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs2264762	0.83[YRI][hapmap]
rs2264814	0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs2264815	0.86[YRI][hapmap]
rs28669886	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2888888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34955444	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3851632	0.81[ASN][1000 genomes]
rs3851633	0.81[ASN][1000 genomes]
rs4509864	0.92[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55689816	0.85[ASN][1000 genomes]
rs58297001	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58767490	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60224628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60635749	0.81[ASN][1000 genomes]
rs60839334	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61940334	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61940335	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61940342	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61941917	0.81[ASN][1000 genomes]
rs61941922	0.81[ASN][1000 genomes]
rs61943670	0.96[ASN][1000 genomes]
rs61943672	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61943694	0.81[ASN][1000 genomes]
rs6539268	0.81[ASN][1000 genomes]
rs6539269	0.81[ASN][1000 genomes]
rs6539270	0.81[ASN][1000 genomes]
rs6539271	0.81[ASN][1000 genomes]
rs67911933	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7132744	0.82[ASN][1000 genomes]
rs7132971	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7134615	0.81[ASN][1000 genomes]
rs7134881	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7135054	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7137445	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7139139	0.81[ASN][1000 genomes]
rs7139249	0.81[ASN][1000 genomes]
rs7297873	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7303873	0.81[ASN][1000 genomes]
rs7306012	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306277	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7306326	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7308541	0.81[ASN][1000 genomes]
rs7309020	0.81[ASN][1000 genomes]
rs7310703	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7311957	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7315549	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7961133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963213	0.81[ASN][1000 genomes]
rs7965520	0.81[ASN][1000 genomes]
rs7969743	0.81[ASN][1000 genomes]
rs7971581	0.81[ASN][1000 genomes]
rs7976305	0.81[ASN][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106700600-106736000	Weak transcription	Stomach Mucosa	stomach
2	chr12:106704200-106729400	Weak transcription	NHLF	lung
3	chr12:106704200-106729800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr12:106704800-106726800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr12:106704800-106738800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:106705200-106743400	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr12:106705400-106731600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr12:106705400-106743200	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr12:106706000-106727800	Strong transcription	Placenta	Placenta
10	chr12:106707800-106726400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr12:106707800-106738800	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr12:106707800-106738800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr12:106708000-106726800	Strong transcription	Fetal Intestine Large	intestine
14	chr12:106708000-106728200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr12:106708000-106740600	Strong transcription	Primary T cells from cord blood	blood
16	chr12:106708000-106741000	Strong transcription	Primary B cells from peripheral blood	blood
17	chr12:106708400-106728000	Strong transcription	Thymus	Thymus
18	chr12:106708600-106727000	Strong transcription	Primary hematopoietic stem cells	blood
19	chr12:106710000-106729800	Weak transcription	Hela-S3	cervix
20	chr12:106712000-106732600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr12:106713400-106741600	Weak transcription	Small Intestine	intestine
22	chr12:106716400-106735400	Weak transcription	Right Atrium	heart
23	chr12:106716600-106729800	Weak transcription	HepG2	liver
24	chr12:106716800-106735400	Weak transcription	Esophagus	oesophagus
25	chr12:106716800-106736000	Weak transcription	Gastric	stomach
26	chr12:106717000-106729200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr12:106717000-106735600	Weak transcription	HSMMtube	muscle
28	chr12:106717800-106729800	Weak transcription	NHDF-Ad	bronchial
29	chr12:106719600-106735400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr12:106720200-106735400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr12:106720200-106736000	Weak transcription	Fetal Intestine Small	intestine
32	chr12:106720200-106736200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr12:106720400-106729800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr12:106720800-106730800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr12:106720800-106738200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr12:106721200-106731000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr12:106721400-106733600	Weak transcription	Fetal Heart	heart
38	chr12:106721800-106729800	Weak transcription	Fetal Lung	lung
39	chr12:106722000-106731000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr12:106722400-106727000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
41	chr12:106722600-106727000	Strong transcription	Rectal Smooth Muscle	rectum
42	chr12:106722800-106735600	Weak transcription	Pancreas	Pancrea
43	chr12:106723200-106729000	Weak transcription	Duodenum Mucosa	Duodenum
44	chr12:106723200-106738000	Weak transcription	Fetal Brain Male	brain
45	chr12:106723400-106735400	Weak transcription	Colonic Mucosa	Colon
46	chr12:106723400-106736000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr12:106723400-106736400	Weak transcription	Fetal Stomach	stomach
48	chr12:106723600-106728200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr12:106723600-106751000	Weak transcription	Fetal Kidney	kidney
50	chr12:106723800-106726800	Strong transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links