Variant report

Variant	rs10861577
Chromosome Location	chr12:106736097-106736098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106620792..106623041-chr12:106734428..106736723,2	MCF-7	breast:
2	chr12:106729650..106732454-chr12:106734851..106738258,4	MCF-7	breast:
3	chr12:106734254..106736719-chr12:106737374..106739758,2	MCF-7	breast:
4	chr12:106735869..106738323-chr12:106750282..106753140,2	MCF-7	breast:
5	chr12:106616646..106619535-chr12:106735717..106738545,2	MCF-7	breast:
6	chr12:106694748..106697274-chr12:106734322..106737033,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166046	Chromatin interaction
ENSG00000013503	Chromatin interaction

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10444532	0.86[EUR][1000 genomes]
rs10507211	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10746059	0.92[ASN][1000 genomes]
rs10746060	0.86[EUR][1000 genomes]
rs10778464	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10778465	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10778466	0.86[EUR][1000 genomes]
rs10778468	0.85[EUR][1000 genomes]
rs10778469	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10778471	0.85[EUR][1000 genomes]
rs10778473	0.82[EUR][1000 genomes]
rs10778474	0.82[EUR][1000 genomes]
rs10778476	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10861578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861579	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10861580	0.81[ASN][1000 genomes]
rs10861581	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10861582	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10861583	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10861585	0.90[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10861586	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10861587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10861588	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861589	0.81[ASN][1000 genomes]
rs10861590	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861591	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861592	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10861593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10861595	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10861597	1.00[CHB][hapmap]
rs10861601	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs10861605	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10861608	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11112933	1.00[CHB][hapmap]
rs11112940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11112942	0.92[ASN][1000 genomes]
rs11112943	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11112945	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11112948	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11112949	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11112951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11112952	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11112953	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11112957	0.81[ASN][1000 genomes]
rs11112961	0.95[EUR][1000 genomes]
rs11112971	0.86[EUR][1000 genomes]
rs11112979	0.85[EUR][1000 genomes]
rs11112980	0.84[EUR][1000 genomes]
rs11112990	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11112991	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11112992	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11112993	0.85[EUR][1000 genomes]
rs11113003	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11113004	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11113009	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1134577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11609315	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11611176	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11611815	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11615682	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11835362	0.84[ASN][1000 genomes]
rs12305705	0.85[EUR][1000 genomes]
rs12312915	0.85[EUR][1000 genomes]
rs12422988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12423068	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12424952	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12425459	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17038414	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17218490	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17284674	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17285274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1921952	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2141774	0.85[EUR][1000 genomes]
rs2243455	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2374606	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2374610	0.89[EUR][1000 genomes]
rs28669886	0.92[ASN][1000 genomes]
rs2888888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2900499	0.86[EUR][1000 genomes]
rs2900500	0.86[EUR][1000 genomes]
rs34955444	0.92[ASN][1000 genomes]
rs3851631	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3851632	0.83[EUR][1000 genomes]
rs4509864	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4625578	0.85[EUR][1000 genomes]
rs55678155	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55689816	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58297001	0.92[ASN][1000 genomes]
rs58767490	0.92[ASN][1000 genomes]
rs60224628	0.92[ASN][1000 genomes]
rs60839334	0.86[ASN][1000 genomes]
rs61940334	0.92[ASN][1000 genomes]
rs61940335	0.92[ASN][1000 genomes]
rs61940342	0.92[ASN][1000 genomes]
rs61941917	0.84[EUR][1000 genomes]
rs61941918	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61941920	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61941921	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61941943	0.84[ASN][1000 genomes]
rs61941944	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61943670	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61943672	0.92[ASN][1000 genomes]
rs61943690	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6539268	0.86[EUR][1000 genomes]
rs67911933	0.81[ASN][1000 genomes]
rs67966244	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7132744	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7132971	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7134615	0.85[EUR][1000 genomes]
rs7134881	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs7135054	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7136098	0.82[EUR][1000 genomes]
rs7139139	0.85[EUR][1000 genomes]
rs7298062	0.80[EUR][1000 genomes]
rs7306012	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7306326	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7309020	0.82[EUR][1000 genomes]
rs7310703	0.92[ASN][1000 genomes]
rs7311957	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7961133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7971581	0.81[EUR][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106704800-106738800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:106705200-106743400	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr12:106705400-106743200	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr12:106707800-106738800	Strong transcription	Primary T helper cells PMA-I stimulated	--
5	chr12:106707800-106738800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr12:106708000-106740600	Strong transcription	Primary T cells from cord blood	blood
7	chr12:106708000-106741000	Strong transcription	Primary B cells from peripheral blood	blood
8	chr12:106713400-106741600	Weak transcription	Small Intestine	intestine
9	chr12:106720200-106736200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr12:106720800-106738200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr12:106723200-106738000	Weak transcription	Fetal Brain Male	brain
12	chr12:106723400-106736400	Weak transcription	Fetal Stomach	stomach
13	chr12:106723600-106751000	Weak transcription	Fetal Kidney	kidney
14	chr12:106724000-106736600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr12:106724000-106742600	Strong transcription	Primary B cells from cord blood	blood
16	chr12:106724000-106751000	Weak transcription	Fetal Brain Female	brain
17	chr12:106724200-106736800	Weak transcription	Brain Germinal Matrix	brain
18	chr12:106726800-106736200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr12:106730800-106736200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr12:106731200-106743600	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr12:106731800-106737800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr12:106733200-106741000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr12:106733200-106742600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr12:106733400-106737200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr12:106733400-106738600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr12:106733400-106738600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr12:106733600-106736200	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr12:106733600-106737000	Enhancers	Fetal Heart	heart
29	chr12:106733600-106737200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr12:106733600-106738600	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr12:106734000-106737200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr12:106734200-106736200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr12:106734200-106736200	Enhancers	NHDF-Ad	bronchial
34	chr12:106734400-106739200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr12:106734600-106736200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr12:106734600-106736400	Enhancers	Fetal Lung	lung
37	chr12:106734600-106736800	Strong transcription	Placenta	Placenta
38	chr12:106734600-106741200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr12:106734800-106737400	Genic enhancers	Brain Cingulate Gyrus	brain
40	chr12:106735000-106736400	Genic enhancers	Brain Substantia Nigra	brain
41	chr12:106735000-106736400	Enhancers	NHLF	lung
42	chr12:106735000-106736800	Strong transcription	Thymus	Thymus
43	chr12:106735000-106740400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr12:106735200-106736400	Genic enhancers	Lung	lung
45	chr12:106735200-106736600	Genic enhancers	Rectal Mucosa Donor 29	rectum
46	chr12:106735200-106736800	Enhancers	Psoas Muscle	Psoas
47	chr12:106735200-106736800	Enhancers	Right Ventricle	heart
48	chr12:106735200-106740400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
49	chr12:106735400-106736200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr12:106735400-106736400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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