Variant report

Variant	rs71322881
Chromosome Location	chr3:89576879-89576880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13080457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13082336	1.00[AMR][1000 genomes]
rs71322876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008018	chr3:89382031-90254063	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv536639	chr3:89382031-90254063	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1010932	chr3:89424428-90192503	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv590952	chr3:89493167-89727198	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1010021	chr3:89521983-90141988	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv524781	chr3:89543677-89597679	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv530024	chr3:89548440-90304841	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:89574800-89578200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:89574800-89578400	Weak transcription	Fetal Lung	lung
3	chr3:89574800-89578800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:89575600-89577200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:89575800-89579400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:89576000-89578800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:89576200-89577000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr3:89576200-89577600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:89576400-89577600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:89576400-89577600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:89576400-89577600	Weak transcription	Brain Germinal Matrix	brain
12	chr3:89576600-89578200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:89576800-89577600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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