Variant report
| Variant | rs71331777 |
|---|---|
| Chromosome Location | chr3:134504969-134504970 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:134503890..134505815-chr3:134513928..134515924,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000154928 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10935127 | 1.00[ASN][1000 genomes] |
| rs12486490 | 1.00[ASN][1000 genomes] |
| rs12489898 | 1.00[ASN][1000 genomes] |
| rs13075174 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13075819 | 1.00[ASN][1000 genomes] |
| rs13075826 | 1.00[ASN][1000 genomes] |
| rs1447684 | 1.00[ASN][1000 genomes] |
| rs34011503 | 1.00[ASN][1000 genomes] |
| rs34337594 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35026342 | 1.00[ASN][1000 genomes] |
| rs35100294 | 1.00[ASN][1000 genomes] |
| rs4955449 | 1.00[ASN][1000 genomes] |
| rs4955481 | 1.00[ASN][1000 genomes] |
| rs4955484 | 1.00[ASN][1000 genomes] |
| rs59205084 | 1.00[ASN][1000 genomes] |
| rs71331775 | 1.00[ASN][1000 genomes] |
| rs7340667 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7611548 | 1.00[ASN][1000 genomes] |
| rs7644265 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877515 | chr3:134460368-134591138 | Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
