Variant report

Variant	rs7135874
Chromosome Location	chr12:124252579-124252580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6488904	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67399282	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7301897	0.97[ASN][1000 genomes]
rs7316847	0.97[ASN][1000 genomes]
rs73420364	0.97[ASN][1000 genomes]
rs7976110	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124244800-124254800	Weak transcription	HSMMtube	muscle
2	chr12:124251800-124252600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:124251800-124252800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:124251800-124253200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr12:124252000-124252600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr12:124252000-124252600	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr12:124252000-124252600	Enhancers	Fetal Thymus	thymus
8	chr12:124252000-124252800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr12:124252000-124252800	Flanking Active TSS	GM12878-XiMat	blood
10	chr12:124252000-124252800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr12:124252200-124252600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
12	chr12:124252200-124252600	Active TSS	Primary B cells from cord blood	blood
13	chr12:124252200-124252600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr12:124252200-124252600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr12:124252200-124252600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr12:124252200-124252600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr12:124252200-124252800	Enhancers	Primary B cells from peripheral blood	blood
18	chr12:124252400-124252600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr12:124252400-124252600	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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