Variant report

Variant	rs7316847
Chromosome Location	chr12:124250893-124250894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:124249980..124253359-chr12:124255301..124258444,3	K562	blood:
2	chr12:124249743..124251275-chr12:124257578..124259998,2	MCF-7	breast:
3	chr12:124249553..124253179-chr12:124255301..124259435,4	K562	blood:

rs_ID	r²[population]
rs10160937	1.00[JPT][hapmap]
rs1040156	1.00[JPT][hapmap]
rs1051793	1.00[JPT][hapmap]
rs1060637	1.00[JPT][hapmap]
rs10732574	1.00[JPT][hapmap]
rs10734906	1.00[JPT][hapmap]
rs10744158	1.00[JPT][hapmap]
rs10744160	1.00[JPT][hapmap]
rs10744161	1.00[JPT][hapmap]
rs10744162	1.00[JPT][hapmap]
rs10773034	1.00[JPT][hapmap]
rs10846537	1.00[JPT][hapmap]
rs10846553	1.00[JPT][hapmap]
rs11572920	1.00[JPT][hapmap]
rs11572952	1.00[JPT][hapmap]
rs11609591	1.00[JPT][hapmap]
rs11611354	1.00[JPT][hapmap]
rs11612030	1.00[JPT][hapmap]
rs11612479	1.00[JPT][hapmap]
rs11612927	1.00[JPT][hapmap]
rs11613632	1.00[JPT][hapmap]
rs11837144	1.00[JPT][hapmap]
rs12580486	1.00[JPT][hapmap]
rs12817757	1.00[JPT][hapmap]
rs12820195	1.00[JPT][hapmap]
rs12827074	1.00[JPT][hapmap]
rs12829893	1.00[JPT][hapmap]
rs12830927	1.00[JPT][hapmap]
rs1399961	1.00[JPT][hapmap]
rs1515815	1.00[JPT][hapmap]
rs2176152	1.00[JPT][hapmap]
rs2222060	1.00[JPT][hapmap]
rs2271660	1.00[JPT][hapmap]
rs2271662	1.00[JPT][hapmap]
rs2333834	1.00[JPT][hapmap]
rs2333838	1.00[JPT][hapmap]
rs2333840	1.00[JPT][hapmap]
rs4930708	1.00[JPT][hapmap]
rs6488888	1.00[JPT][hapmap]
rs6488893	1.00[JPT][hapmap]
rs6488897	1.00[JPT][hapmap]
rs6488904	0.97[ASN][1000 genomes]
rs67399282	0.97[ASN][1000 genomes]
rs7132115	1.00[JPT][hapmap]
rs7133199	1.00[JPT][hapmap]
rs7134074	1.00[JPT][hapmap]
rs7135542	1.00[JPT][hapmap]
rs7135660	1.00[JPT][hapmap]
rs7135874	0.97[ASN][1000 genomes]
rs7136939	1.00[JPT][hapmap]
rs7294984	1.00[JPT][hapmap]
rs7295552	1.00[JPT][hapmap]
rs7297576	1.00[JPT][hapmap]
rs7298440	1.00[JPT][hapmap]
rs7298831	1.00[JPT][hapmap]
rs7301641	1.00[JPT][hapmap]
rs7301897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7302649	1.00[JPT][hapmap]
rs7302708	1.00[JPT][hapmap]
rs7306549	1.00[JPT][hapmap]
rs7307008	1.00[JPT][hapmap]
rs7307343	1.00[JPT][hapmap]
rs7308398	1.00[JPT][hapmap]
rs7308862	1.00[JPT][hapmap]
rs7309528	1.00[JPT][hapmap]
rs7310918	1.00[JPT][hapmap]
rs7313032	1.00[JPT][hapmap]
rs7313261	1.00[JPT][hapmap]
rs73420364	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7397745	1.00[JPT][hapmap]
rs7398082	1.00[JPT][hapmap]
rs7399128	1.00[JPT][hapmap]
rs7399224	1.00[JPT][hapmap]
rs7953599	1.00[JPT][hapmap]
rs7958693	1.00[JPT][hapmap]
rs7963968	1.00[JPT][hapmap]
rs7964443	1.00[JPT][hapmap]
rs7973695	1.00[JPT][hapmap]
rs7974279	1.00[JPT][hapmap]
rs7975119	1.00[JPT][hapmap]
rs7975233	1.00[JPT][hapmap]
rs7978447	1.00[JPT][hapmap]
rs7979528	1.00[JPT][hapmap]
rs882563	1.00[JPT][hapmap]

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124239800-124252000	Weak transcription	K562	blood
2	chr12:124244800-124254800	Weak transcription	HSMMtube	muscle
3	chr12:124247200-124251600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr12:124247600-124251800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr12:124247600-124252000	Weak transcription	Fetal Thymus	thymus
6	chr12:124248000-124251600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:124248000-124251600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:124248000-124252200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr12:124248000-124252200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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