Variant report

Variant	rs6488897
Chromosome Location	chr12:124195483-124195484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:124194853..124196399-chr12:124201524..124203920,2	K562	blood:
2	chr12:123716636..123719388-chr12:124194108..124196844,2	K562	blood:
3	chr12:124116424..124121252-chr12:124194298..124198817,7	K562	blood:
4	chr12:124190696..124192494-chr12:124194252..124196865,2	K562	blood:
5	chr12:123716636..123719469-chr12:124192807..124195608,2	K562	blood:
6	chr12:124185982..124187602-chr12:124193943..124196577,2	K562	blood:
7	chr12:124191295..124193347-chr12:124194777..124198625,4	MCF-7	breast:
8	chr12:124141910..124144216-chr12:124195360..124197441,2	MCF-7	breast:
9	chr12:124155376..124157580-chr12:124194948..124197481,2	K562	blood:
10	chr12:124195456..124198460-chr12:124455550..124458339,3	MCF-7	breast:
11	chr12:124195458..124197705-chr12:124223204..124225071,2	MCF-7	breast:
12	chr12:124188235..124191139-chr12:124193941..124195953,3	MCF-7	breast:
13	chr12:124115420..124119615-chr12:124195159..124199573,8	MCF-7	breast:
14	chr12:124155436..124158746-chr12:124195101..124198299,4	MCF-7	breast:
15	chr12:124195139..124196741-chr12:124216677..124218308,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000111358	Chromatin interaction
ENSG00000168778	Chromatin interaction
ENSG00000270095	Chromatin interaction
ENSG00000119242	Chromatin interaction
ENSG00000051825	Chromatin interaction
ENSG00000130921	Chromatin interaction
ENSG00000255839	Chromatin interaction
ENSG00000185344	Chromatin interaction
ENSG00000178882	Chromatin interaction
ENSG00000179195	Chromatin interaction
ENSG00000111361	Chromatin interaction

Extended variants
information (count: 204 )
Associated
traits (count: 17 )

rSNPs within LD-proxies of this variant (count:190)

rs_ID	r²[population]
rs10160842	0.84[ASN][1000 genomes]
rs10160937	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1040156	0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs1051793	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1060637	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10732574	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10734905	1.00[CHB][hapmap]
rs10734906	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs10734908	0.84[ASN][1000 genomes]
rs10744158	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10744160	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.84[ASN][1000 genomes]
rs10744161	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10744162	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs10773032	0.84[ASN][1000 genomes]
rs10773034	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10846535	0.92[CEU][hapmap];0.90[MEX][hapmap]
rs10846537	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10846540	0.81[EUR][1000 genomes]
rs10846549	0.81[ASN][1000 genomes]
rs10846553	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1139320	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11572920	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11572952	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11609591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611354	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11611450	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11612030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11612479	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11612927	0.96[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11613632	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11614155	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11614468	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11614659	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11615162	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11615300	0.83[EUR][1000 genomes]
rs11829958	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11830462	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11831536	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11833604	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11834141	0.88[EUR][1000 genomes]
rs11834492	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11834808	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11837144	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs12580486	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12811354	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12813346	0.82[EUR][1000 genomes]
rs12813758	0.91[EUR][1000 genomes]
rs12817576	0.90[ASN][1000 genomes]
rs12817757	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12818596	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12819746	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12820195	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12821219	0.82[EUR][1000 genomes]
rs12821242	0.96[CEU][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12822546	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12823866	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12824075	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12825800	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12827074	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12828408	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12828633	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12829893	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12829984	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12830927	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12831081	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1399961	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1515815	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1878077	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs1962020	0.86[EUR][1000 genomes]
rs2176152	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs2203500	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2222060	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2222061	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2250026	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2271660	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap]
rs2271662	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2333834	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2333837	0.81[ASN][1000 genomes]
rs2333838	0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap]
rs2333840	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34247974	0.84[ASN][1000 genomes]
rs34534928	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34996665	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35114195	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35158437	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35416308	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35649708	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35804181	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35900897	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35911711	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35946281	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3748269	0.89[CEU][hapmap];0.84[MEX][hapmap]
rs3817309	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4456350	0.89[CEU][hapmap]
rs4930708	0.84[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6488888	0.92[CEU][hapmap];0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6488891	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6488892	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6488893	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6488894	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6488899	0.84[ASN][1000 genomes]
rs66471742	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66647364	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66690784	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67178535	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67516712	0.93[EUR][1000 genomes]
rs7132115	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs7133199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7133543	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7133734	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7134074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7135267	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7135542	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7135660	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7136939	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7137946	0.96[CEU][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs7138503	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7139193	0.96[CEU][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs71458814	0.90[EUR][1000 genomes]
rs7294984	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7295552	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap]
rs7296804	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7297576	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7298440	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7298831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7301065	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7301641	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs7301907	0.83[EUR][1000 genomes]
rs7302183	0.87[CEU][hapmap]
rs7302449	0.83[EUR][1000 genomes]
rs7302649	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7302708	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7302788	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7304052	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7304837	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7305701	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7305838	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7306549	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7307008	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7307343	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7308234	0.95[CEU][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7308398	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7308862	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7309528	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7310918	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7313032	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7313140	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7313261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7313628	0.85[CEU][hapmap]
rs73219037	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7397160	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7397230	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7397745	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.84[ASN][1000 genomes]
rs7397930	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7398082	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7398152	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7398298	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7398384	0.81[ASN][1000 genomes]
rs7398606	0.84[ASN][1000 genomes]
rs7398641	0.84[ASN][1000 genomes]
rs7398851	0.84[ASN][1000 genomes]
rs7399128	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7399224	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs786444	0.89[CEU][hapmap];0.84[MEX][hapmap]
rs786448	0.89[CEU][hapmap];0.84[MEX][hapmap]
rs7953596	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7953599	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7957429	0.93[ASN][1000 genomes]
rs7958693	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7959553	0.96[CEU][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7960017	0.87[ASN][1000 genomes]
rs7960951	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963498	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7963968	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7964443	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7966867	0.96[CEU][hapmap];0.85[MEX][hapmap];0.82[EUR][1000 genomes]
rs7968029	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7969130	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7969234	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7969964	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7973155	0.96[CEU][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7973695	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7974279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975119	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7975233	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7978447	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7979528	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs882563	0.81[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs908373	0.81[CEU][hapmap]
rs9788204	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050598	chr12:123991646-124214332	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv541623	chr12:123991646-124214332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	esv2757517	chr12:124110122-124195856	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv2759918	chr12:124110122-124195856	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv1042866	chr12:124115035-124195856	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv442292	chr12:124115047-124195854	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	esv35148	chr12:124119120-124196120	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	esv2756516	chr12:124119120-124196120	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv455733	chr12:124119983-124195856	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
11	nsv560496	chr12:124119983-124195856	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
12	nsv560497	chr12:124129460-124195856	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	nsv560498	chr12:124129924-124195856	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
14	nsv832534	chr12:124157605-124234611	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:17)

SNP	Gene	Cis/trans	Tissue	Source
rs6488897	TCTN2	cis	Artery Tibial	GTEx
rs6488897	TCTN2	cis	Muscle Skeletal	GTEx
rs6488897	TCTN2	cis	Esophagus Muscularis	GTEx
rs6488897	TCTN2	cis	Stomach	GTEx
rs6488897	TCTN2	cis	Skin Sun Exposed Lower leg	GTEx
rs6488897	TCTN2	cis	Adipose Subcutaneous	GTEx
rs6488897	DDX55	cis	parietal	SCAN
rs6488897	ATP6V0A2	cis	parietal	SCAN
rs6488897	CABP1	cis	cerebellum	SCAN
rs6488897	TCTN2	cis	Thyroid	GTEx
rs6488897	ATP6V0A2	cis	Nerve Tibial	GTEx
rs6488897	TCTN2	cis	cerebellum	SCAN
rs6488897	TCTN2	cis	lung	GTEx
rs6488897	DDX55	cis	cerebellum	SCAN
rs6488897	DDX55	cis	Brain Pons	GTEx
rs6488897	TCTN2	cis	parietal	SCAN
rs6488897	TCTN2	cis	Nerve Tibial	GTEx

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124156400-124196000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr12:124156400-124196000	Weak transcription	Thymus	Thymus
3	chr12:124156600-124195600	Weak transcription	Esophagus	oesophagus
4	chr12:124156600-124195800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr12:124156600-124195800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr12:124156600-124196000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr12:124156600-124196000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr12:124156600-124196000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr12:124156600-124196000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr12:124156800-124196000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr12:124156800-124196000	Weak transcription	HUVEC	blood vessel
12	chr12:124156800-124196200	Weak transcription	HSMM	muscle
13	chr12:124157000-124196000	Weak transcription	Fetal Heart	heart
14	chr12:124157000-124196000	Weak transcription	NH-A	brain
15	chr12:124160000-124195600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr12:124160200-124195800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr12:124160200-124196000	Weak transcription	Right Ventricle	heart
18	chr12:124161600-124196000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr12:124161800-124195800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr12:124164200-124195800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr12:124164200-124196000	Weak transcription	Fetal Thymus	thymus
22	chr12:124166200-124195800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr12:124166800-124196000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr12:124173400-124196000	Weak transcription	GM12878-XiMat	blood
25	chr12:124176000-124195800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr12:124176200-124195800	Weak transcription	HMEC	breast
27	chr12:124176200-124196200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr12:124176200-124196400	Weak transcription	Gastric	stomach
29	chr12:124177600-124195800	Weak transcription	Hela-S3	cervix
30	chr12:124181200-124195800	Weak transcription	Stomach Mucosa	stomach
31	chr12:124181600-124196000	Weak transcription	Primary T cells from cord blood	blood
32	chr12:124181800-124195800	Weak transcription	Primary B cells from peripheral blood	blood
33	chr12:124182000-124196000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr12:124182400-124195600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr12:124184800-124195800	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr12:124184800-124196000	Weak transcription	Fetal Kidney	kidney
37	chr12:124185000-124195800	Weak transcription	Brain Hippocampus Middle	brain
38	chr12:124185000-124195800	Weak transcription	Colon Smooth Muscle	Colon
39	chr12:124185000-124195800	Weak transcription	Placenta	Placenta
40	chr12:124185000-124196000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr12:124185000-124196200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr12:124185400-124195800	Weak transcription	Lung	lung
43	chr12:124185400-124195800	Weak transcription	HepG2	liver
44	chr12:124185400-124196000	Weak transcription	Left Ventricle	heart
45	chr12:124185600-124195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr12:124185600-124196000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr12:124185800-124196000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr12:124185800-124196200	Weak transcription	NHLF	lung
49	chr12:124186000-124195800	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr12:124186800-124196200	Weak transcription	Placenta Amnion	Placenta Amnion

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