Variant report

Variant	rs1878077
Chromosome Location	chr12:124206196-124206197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr12:124205684-124206215	MCF-7	breast:	n/a	n/a
2	NR2C2	chr12:124205794-124206323	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
RPL27P12	TF binding region
ATP6V0A2	TF binding region

Extended variants
information (count: 188 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:184)

rs_ID	r²[population]
rs10160842	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10160937	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1040156	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1051793	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs1060637	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];0.83[TSI][hapmap]
rs10732574	0.92[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734903	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734904	0.91[EUR][1000 genomes]
rs10734905	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[LWK][hapmap];0.85[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734906	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.97[LWK][hapmap];0.85[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10734907	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10734908	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10744157	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10744158	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10744159	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10744160	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10744161	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10744162	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[EUR][1000 genomes]
rs10773026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10773030	0.96[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10773031	0.83[EUR][1000 genomes]
rs10773032	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10773033	0.81[EUR][1000 genomes]
rs10773034	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10846537	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs10846549	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10846550	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10846551	0.83[EUR][1000 genomes]
rs10846553	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1139320	0.87[ASN][1000 genomes]
rs1139789	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572920	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];0.83[TSI][hapmap];0.86[ASN][1000 genomes]
rs11572952	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs11609591	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs11611354	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11611450	0.83[ASN][1000 genomes]
rs11612030	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11612479	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.85[TSI][hapmap];0.83[ASN][1000 genomes]
rs11612927	0.88[CEU][hapmap];0.86[ASN][1000 genomes]
rs11613632	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11614155	0.83[ASN][1000 genomes]
rs11614468	0.83[ASN][1000 genomes]
rs11615162	0.86[ASN][1000 genomes]
rs11830462	0.83[ASN][1000 genomes]
rs11831536	0.83[ASN][1000 genomes]
rs11833604	0.83[ASN][1000 genomes]
rs11834492	0.83[ASN][1000 genomes]
rs11834808	0.83[ASN][1000 genomes]
rs11837144	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.97[LWK][hapmap];0.85[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12580486	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12811354	0.83[ASN][1000 genomes]
rs12813758	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12817576	0.86[ASN][1000 genomes]
rs12817757	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12818596	0.83[ASN][1000 genomes]
rs12820195	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12821242	0.83[CEU][hapmap];0.83[ASN][1000 genomes]
rs12822546	0.83[ASN][1000 genomes]
rs12823866	0.83[ASN][1000 genomes]
rs12824075	0.83[ASN][1000 genomes]
rs12827074	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs12828408	0.87[ASN][1000 genomes]
rs12829893	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.85[TSI][hapmap];0.83[ASN][1000 genomes]
rs12829984	0.83[ASN][1000 genomes]
rs12830927	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];0.83[TSI][hapmap];0.86[ASN][1000 genomes]
rs12831081	0.83[ASN][1000 genomes]
rs1399961	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];0.97[LWK][hapmap];0.85[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515815	0.81[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];0.80[TSI][hapmap]
rs2176152	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2203500	0.83[ASN][1000 genomes]
rs2222060	0.81[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];0.83[ASN][1000 genomes]
rs2271660	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271661	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271662	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2333834	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs2333835	0.89[EUR][1000 genomes]
rs2333836	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2333837	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2333838	0.89[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.80[MEX][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2333839	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2333840	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34247974	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34534928	0.83[ASN][1000 genomes]
rs34996665	0.83[ASN][1000 genomes]
rs35416308	0.83[ASN][1000 genomes]
rs35804181	0.83[ASN][1000 genomes]
rs35900897	0.80[ASN][1000 genomes]
rs35911711	0.81[ASN][1000 genomes]
rs35946281	0.83[ASN][1000 genomes]
rs3817309	0.87[ASN][1000 genomes]
rs4930708	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs6488888	0.89[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.88[TSI][hapmap];0.80[ASN][1000 genomes]
rs6488891	0.83[ASN][1000 genomes]
rs6488892	0.83[ASN][1000 genomes]
rs6488893	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs6488894	0.83[ASN][1000 genomes]
rs6488897	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs6488899	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6488900	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6488902	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66471742	0.87[ASN][1000 genomes]
rs66647364	0.81[ASN][1000 genomes]
rs66690784	0.83[ASN][1000 genomes]
rs67178535	0.83[ASN][1000 genomes]
rs7132115	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.97[LWK][hapmap];0.85[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7133199	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs7133543	0.83[ASN][1000 genomes]
rs7133734	0.87[ASN][1000 genomes]
rs7134074	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs7135267	0.87[ASN][1000 genomes]
rs7135542	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7135660	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7136939	0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[GIH][hapmap];0.83[TSI][hapmap];0.83[ASN][1000 genomes]
rs7294984	0.88[CEU][hapmap];0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs7295552	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296804	0.83[ASN][1000 genomes]
rs7297576	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs7298440	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];0.83[ASN][1000 genomes]
rs7298831	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs7300721	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7300818	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7301641	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];0.97[LWK][hapmap];0.85[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7302649	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];0.83[ASN][1000 genomes]
rs7302708	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7302788	0.83[ASN][1000 genomes]
rs7304052	0.83[ASN][1000 genomes]
rs7304837	0.83[ASN][1000 genomes]
rs7305838	0.83[ASN][1000 genomes]
rs7306549	0.81[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap]
rs7307008	0.84[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.88[TSI][hapmap];0.83[ASN][1000 genomes]
rs7307343	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7308234	0.82[CEU][hapmap];0.83[ASN][1000 genomes]
rs7308398	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7308862	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs7309528	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];0.83[ASN][1000 genomes]
rs7310918	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7311789	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7313032	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs7313261	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs73219037	0.83[ASN][1000 genomes]
rs7397160	0.83[ASN][1000 genomes]
rs7397230	0.83[ASN][1000 genomes]
rs7397240	0.84[EUR][1000 genomes]
rs7397745	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7397746	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7397930	0.83[ASN][1000 genomes]
rs7398082	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7398152	0.83[ASN][1000 genomes]
rs7398298	0.83[ASN][1000 genomes]
rs7398384	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7398606	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7398641	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7398851	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7399128	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7399224	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];0.83[ASN][1000 genomes]
rs7953596	0.83[ASN][1000 genomes]
rs7953599	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];0.83[ASN][1000 genomes]
rs7956045	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7956751	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7957429	0.83[ASN][1000 genomes]
rs7958693	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs7959553	0.84[CEU][hapmap];0.83[ASN][1000 genomes]
rs7960017	0.82[ASN][1000 genomes]
rs7960403	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963498	0.83[ASN][1000 genomes]
rs7963968	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];0.83[ASN][1000 genomes]
rs7964443	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs7968029	0.83[ASN][1000 genomes]
rs7969130	0.83[ASN][1000 genomes]
rs7969234	0.83[ASN][1000 genomes]
rs7969964	0.83[ASN][1000 genomes]
rs7973155	0.84[CEU][hapmap];0.83[ASN][1000 genomes]
rs7973695	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7974279	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs7974331	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7974462	0.87[EUR][1000 genomes]
rs7975119	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7975233	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];0.83[ASN][1000 genomes]
rs7978447	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs7979528	0.85[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.86[TSI][hapmap];0.83[ASN][1000 genomes]
rs882563	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs968203	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9787987	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9788204	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050598	chr12:123991646-124214332	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv541623	chr12:123991646-124214332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv832534	chr12:124157605-124234611	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs1878077	TCTN2	cis	Thyroid	GTEx
rs1878077	TCTN2	cis	parietal	SCAN
rs1878077	DDX55	cis	parietal	SCAN
rs1878077	DYNLL1	cis	parietal	SCAN
rs1878077	ATP6V0A2	cis	parietal	SCAN
rs1878077	TCTN2	cis	lung	GTEx
rs1878077	TCTN2	cis	Nerve Tibial	GTEx
rs1878077	TCTN2	cis	Stomach	GTEx
rs1878077	ATP6V0A2	cis	Nerve Tibial	GTEx
rs1878077	TCTN2	cis	Esophagus Muscularis	GTEx
rs1878077	TCTN2	cis	Artery Tibial	GTEx
rs1878077	TCTN2	cis	cerebellum	SCAN
rs1878077	TCTN2	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124197600-124234400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:124198200-124207000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:124198200-124207200	Weak transcription	Ovary	ovary
4	chr12:124198400-124210600	Weak transcription	NH-A	brain
5	chr12:124198600-124206800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr12:124198600-124207200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:124198600-124212400	Weak transcription	NHLF	lung
8	chr12:124198800-124210800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr12:124198800-124223600	Weak transcription	Right Atrium	heart
10	chr12:124199000-124206200	Weak transcription	NHEK	skin
11	chr12:124199000-124207000	Weak transcription	Fetal Kidney	kidney
12	chr12:124199000-124207200	Weak transcription	Brain Substantia Nigra	brain
13	chr12:124199000-124207200	Weak transcription	Esophagus	oesophagus
14	chr12:124199000-124210000	Weak transcription	Colon Smooth Muscle	Colon
15	chr12:124199000-124212400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr12:124199200-124206200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr12:124199200-124206400	Weak transcription	Adipose Nuclei	Adipose
18	chr12:124199200-124207200	Weak transcription	Small Intestine	intestine
19	chr12:124199200-124210000	Weak transcription	Colonic Mucosa	Colon
20	chr12:124199200-124210400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr12:124199200-124210600	Weak transcription	Hela-S3	cervix
22	chr12:124199200-124212400	Weak transcription	Fetal Lung	lung
23	chr12:124199200-124213200	Weak transcription	Pancreas	Pancrea
24	chr12:124199600-124207200	Weak transcription	Gastric	stomach
25	chr12:124199600-124221000	Weak transcription	Psoas Muscle	Psoas
26	chr12:124200000-124207000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr12:124200000-124207800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr12:124200200-124207200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr12:124200200-124208200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr12:124200200-124210600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr12:124200200-124210800	Weak transcription	NHDF-Ad	bronchial
32	chr12:124201200-124207400	Weak transcription	GM12878-XiMat	blood
33	chr12:124201400-124207000	Weak transcription	Fetal Brain Male	brain
34	chr12:124201800-124247800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr12:124202200-124242600	Strong transcription	Fetal Stomach	stomach
36	chr12:124202600-124207800	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr12:124202600-124245200	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr12:124202600-124245200	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr12:124203000-124208200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr12:124203000-124230600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr12:124203400-124207800	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr12:124203400-124214200	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr12:124203400-124239800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr12:124203600-124207600	Strong transcription	Brain Angular Gyrus	brain
45	chr12:124203600-124207800	Strong transcription	Brain Anterior Caudate	brain
46	chr12:124203600-124207800	Strong transcription	Fetal Thymus	thymus
47	chr12:124203600-124221000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr12:124203600-124242400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr12:124203600-124242400	Strong transcription	Fetal Muscle Leg	muscle
50	chr12:124203600-124244600	Strong transcription	HUES6 Cell Line	embryonic stem cell

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