Variant report

Variant	rs7136410
Chromosome Location	chr12:41750291-41750292
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10880070	1.00[MEX][hapmap]
rs11180903	0.84[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs11180913	1.00[YRI][hapmap]
rs11180915	1.00[YRI][hapmap]
rs11180917	0.84[ASW][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap]
rs12321301	0.84[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs1458162	0.84[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap]
rs59015177	0.93[AFR][1000 genomes]
rs7136514	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7137999	1.00[YRI][hapmap]
rs73274413	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274416	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274423	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274425	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274449	0.88[AFR][1000 genomes]
rs73274455	0.88[AFR][1000 genomes]
rs73274457	0.88[AFR][1000 genomes]
rs73274468	0.81[AFR][1000 genomes]
rs73274472	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41745800-41750400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:41749600-41751200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:41749600-41751200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:41749600-41755400	Weak transcription	Brain Germinal Matrix	brain
5	chr12:41749800-41755200	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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