Variant report

Variant	rs73274449
Chromosome Location	chr12:41782581-41782582
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11180903	1.00[AMR][1000 genomes]
rs11180913	1.00[AMR][1000 genomes]
rs11180917	1.00[AMR][1000 genomes]
rs58719598	1.00[AMR][1000 genomes]
rs59015177	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59108550	1.00[AMR][1000 genomes]
rs59661256	1.00[AMR][1000 genomes]
rs7136410	0.88[AFR][1000 genomes]
rs7136514	0.88[AFR][1000 genomes]
rs73270902	1.00[AMR][1000 genomes]
rs73274413	0.85[AFR][1000 genomes]
rs73274416	0.89[AFR][1000 genomes]
rs73274423	0.94[AFR][1000 genomes]
rs73274425	0.94[AFR][1000 genomes]
rs73274454	1.00[AMR][1000 genomes]
rs73274455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274468	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274472	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276105	1.00[AMR][1000 genomes]
rs73276107	1.00[AMR][1000 genomes]
rs73276128	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv899036	chr12:41777144-41807859	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv899037	chr12:41777144-41819215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1044910	chr12:41778831-41813198	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv2761735	chr12:41780758-41811938	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv2757501	chr12:41780758-41816002	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv2759896	chr12:41780758-41816002	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv2755020	chr12:41780758-41820936	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41776200-41787400	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links