Variant report

Variant	rs7136877
Chromosome Location	chr12:7760907-7760908
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr12:7760785-7761105	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr12:7760882-7761045	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr12:7760841-7761105	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr12:7760859-7761023	MCF10A-Er-Src	breast:	n/a	n/a
5	MYC	chr12:7760779-7761144	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr12:7760841-7761062	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
NIFKP3	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11054541	0.86[AMR][1000 genomes]
rs11054593	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11054743	0.86[ASN][1000 genomes]
rs11054909	0.83[AMR][1000 genomes]
rs11054951	0.83[AMR][1000 genomes]
rs11533528	0.87[ASN][1000 genomes]
rs11537450	0.88[ASN][1000 genomes]
rs11559770	0.87[ASN][1000 genomes]
rs12227008	0.85[ASN][1000 genomes]
rs12228958	0.83[AMR][1000 genomes]
rs12229835	0.88[ASN][1000 genomes]
rs12231148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419976	0.81[ASN][1000 genomes]
rs1946125	0.88[ASN][1000 genomes]
rs57562412	0.88[ASN][1000 genomes]
rs58180878	0.80[AMR][1000 genomes]
rs59730643	0.86[ASN][1000 genomes]
rs7132588	0.86[ASN][1000 genomes]
rs7301321	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7302914	0.88[ASN][1000 genomes]
rs74058954	0.83[AMR][1000 genomes]
rs7969376	0.88[ASN][1000 genomes]
rs7976907	0.88[ASN][1000 genomes]
rs9634075	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041155	chr12:7655137-7821891	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045650	chr12:7655137-7824995	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv557270	chr12:7727544-7801532	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv468990	chr12:7729433-7801532	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv557271	chr12:7729433-7801532	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv826213	chr12:7730932-7830644	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv468991	chr12:7756706-7821692	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv468992	chr12:7756706-7821692	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv557272	chr12:7756706-7821692	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv521149	chr12:7756706-7836988	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv898643	chr12:7760124-7794736	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv826214	chr12:7760127-7803262	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7758600-7762200	Enhancers	Primary hematopoietic stem cells	blood
2	chr12:7759200-7762200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:7759400-7763000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr12:7759400-7763400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:7759800-7761000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:7760000-7761000	Weak transcription	Fetal Thymus	thymus
7	chr12:7760000-7761800	Enhancers	HMEC	breast
8	chr12:7760200-7761800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:7760400-7762400	Enhancers	NHEK	skin
10	chr12:7760600-7762200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:7760800-7761000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:7760800-7761600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr12:7760800-7761800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr12:7760800-7762600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr12:7760800-7763000	Enhancers	Thymus	Thymus

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