Variant report

Variant	rs71379928
Chromosome Location	chr17:63267759-63267760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12943735	1.00[AFR][1000 genomes]
rs34050956	1.00[AFR][1000 genomes]
rs34239840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35763069	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv482610	chr17:63214370-63372334	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63264600-63267800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr17:63266400-63267800	Enhancers	Fetal Stomach	stomach
3	chr17:63266600-63267800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr17:63266600-63267800	Enhancers	NHDF-Ad	bronchial
5	chr17:63266800-63267800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr17:63266800-63268000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr17:63267000-63267800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr17:63267200-63267800	Enhancers	HSMMtube	muscle
9	chr17:63267400-63267800	Enhancers	Stomach Smooth Muscle	stomach
10	chr17:63267400-63273400	Weak transcription	Fetal Thymus	thymus
11	chr17:63267400-63274600	Weak transcription	Fetal Brain Female	brain
12	chr17:63267600-63267800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr17:63267600-63267800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
14	chr17:63267600-63267800	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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