Variant report

Variant	rs7138626
Chromosome Location	chr12:60665767-60665768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10747870	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11173351	0.83[EUR][1000 genomes]
rs11173359	0.84[EUR][1000 genomes]
rs11173361	0.85[EUR][1000 genomes]
rs11173367	0.87[EUR][1000 genomes]
rs11173386	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11173387	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11173396	0.83[EUR][1000 genomes]
rs1125188	0.83[EUR][1000 genomes]
rs12226976	0.80[EUR][1000 genomes]
rs12228823	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12230599	0.81[ASN][1000 genomes]
rs12231943	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12817959	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1304313	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1319775	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1354469	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1504442	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1504443	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1587821	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1910674	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2134882	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35713358	0.83[ASN][1000 genomes]
rs3901470	0.83[EUR][1000 genomes]
rs4143650	0.88[EUR][1000 genomes]
rs4265627	0.88[EUR][1000 genomes]
rs4347425	0.84[ASN][1000 genomes]
rs4758859	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55661627	0.85[EUR][1000 genomes]
rs61487567	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61923074	0.86[EUR][1000 genomes]
rs61923092	0.88[EUR][1000 genomes]
rs61923093	0.87[EUR][1000 genomes]
rs61923121	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61923124	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61923127	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61923129	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61923130	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61923132	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61923156	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61923157	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61925560	0.83[EUR][1000 genomes]
rs6581305	0.88[EUR][1000 genomes]
rs7131926	0.87[EUR][1000 genomes]
rs7134267	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7136435	0.84[ASN][1000 genomes]
rs7136835	0.81[EUR][1000 genomes]
rs7297548	0.83[ASN][1000 genomes]
rs7313364	0.83[ASN][1000 genomes]
rs7957100	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7961221	0.83[ASN][1000 genomes]
rs7961816	0.82[ASN][1000 genomes]
rs7973156	0.82[ASN][1000 genomes]
rs905722	0.83[EUR][1000 genomes]
rs924835	0.83[EUR][1000 genomes]
rs958543	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs959645	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9634280	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9634281	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1054287	chr12:60601870-60861866	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832431	chr12:60626292-60809233	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60663800-60675600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:60664200-60675400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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