Variant report

Variant	rs55661627
Chromosome Location	chr12:60590193-60590194
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:60578463..60581304-chr12:60589839..60591581,2	MCF-7	breast:

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10506408	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10747870	0.80[EUR][1000 genomes]
rs10784033	0.89[EUR][1000 genomes]
rs10877392	0.85[ASN][1000 genomes]
rs10877398	0.85[EUR][1000 genomes]
rs10877399	0.88[EUR][1000 genomes]
rs10877401	0.86[EUR][1000 genomes]
rs10877402	0.86[EUR][1000 genomes]
rs10877403	0.87[EUR][1000 genomes]
rs10877406	0.84[EUR][1000 genomes]
rs11173327	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11173328	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11173329	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11173336	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11173337	0.89[ASN][1000 genomes]
rs11173339	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11173340	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11173341	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11173343	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11173345	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11173346	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11173351	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11173357	0.87[EUR][1000 genomes]
rs11173359	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173361	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173365	0.84[EUR][1000 genomes]
rs11173367	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173371	0.86[EUR][1000 genomes]
rs11173386	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11173396	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1125188	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12226976	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12227514	0.92[ASN][1000 genomes]
rs12228823	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12230599	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12230817	0.90[ASN][1000 genomes]
rs12231312	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12231943	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12817959	0.84[EUR][1000 genomes]
rs12830074	0.86[EUR][1000 genomes]
rs1319775	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1389256	0.87[EUR][1000 genomes]
rs1493311	0.87[EUR][1000 genomes]
rs1493318	0.89[EUR][1000 genomes]
rs1493325	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1504442	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1504443	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1504444	0.82[EUR][1000 genomes]
rs17595010	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17595325	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17595367	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17602381	0.94[ASN][1000 genomes]
rs17665306	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1910674	0.81[EUR][1000 genomes]
rs35713358	0.80[EUR][1000 genomes]
rs3901470	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3907482	0.80[EUR][1000 genomes]
rs4143650	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4254103	0.84[EUR][1000 genomes]
rs4265627	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4347425	0.87[EUR][1000 genomes]
rs4366523	0.84[EUR][1000 genomes]
rs4406858	0.85[EUR][1000 genomes]
rs4417318	0.94[ASN][1000 genomes]
rs4454757	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4491264	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4567505	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4758743	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4758744	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4758745	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4758858	0.88[EUR][1000 genomes]
rs4758859	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61127975	0.84[ASN][1000 genomes]
rs61487567	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61922947	0.84[ASN][1000 genomes]
rs61922949	0.85[ASN][1000 genomes]
rs61922950	0.85[ASN][1000 genomes]
rs61923065	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61923066	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61923067	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61923074	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61923092	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61923093	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61923121	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61923124	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61923127	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61923129	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61923130	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61923132	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61923156	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61923157	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61925366	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61925560	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6581305	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66587505	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7131926	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7134267	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7136435	0.83[EUR][1000 genomes]
rs7136835	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7138626	0.85[EUR][1000 genomes]
rs7138854	0.85[EUR][1000 genomes]
rs72648145	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7305978	0.83[AMR][1000 genomes]
rs7310323	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7314355	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7957100	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7961221	0.83[EUR][1000 genomes]
rs7973882	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7977642	0.81[ASN][1000 genomes]
rs7979069	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8181648	0.83[ASN][1000 genomes]
rs905722	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs924835	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs958543	0.80[EUR][1000 genomes]
rs959645	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9634280	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9634281	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9668893	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899137	chr12:60568891-60797083	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60586000-60603400	Weak transcription	HMEC	breast
2	chr12:60586200-60590600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr12:60589000-60591000	Weak transcription	NHEK	skin
4	chr12:60589000-60592000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:60589200-60595400	Weak transcription	NHDF-Ad	bronchial
6	chr12:60589200-60595800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr12:60589200-60598200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:60589600-60593400	Weak transcription	K562	blood

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