Variant report

Variant	rs61922947
Chromosome Location	chr12:60480100-60480101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:60478315..60480971-chr12:60488037..60490719,3	MCF-7	breast:
2	chr12:60472741..60475079-chr12:60479250..60481071,2	K562	blood:
3	chr12:60463450..60465824-chr12:60478986..60481258,2	MCF-7	breast:
4	chr12:60466814..60469463-chr12:60479017..60481348,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10506408	0.92[ASN][1000 genomes]
rs10877392	0.96[ASN][1000 genomes]
rs11173327	0.92[ASN][1000 genomes]
rs11173328	0.94[ASN][1000 genomes]
rs11173329	0.91[ASN][1000 genomes]
rs11173336	0.94[ASN][1000 genomes]
rs11173337	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11173339	0.94[ASN][1000 genomes]
rs11173340	0.94[ASN][1000 genomes]
rs11173341	0.94[ASN][1000 genomes]
rs11173343	0.92[ASN][1000 genomes]
rs11173345	0.92[ASN][1000 genomes]
rs11173346	0.92[ASN][1000 genomes]
rs11173351	0.87[ASN][1000 genomes]
rs11173359	0.84[ASN][1000 genomes]
rs11173361	0.84[ASN][1000 genomes]
rs11173367	0.84[ASN][1000 genomes]
rs12226976	0.85[ASN][1000 genomes]
rs12227514	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12230817	0.94[ASN][1000 genomes]
rs12231312	0.92[ASN][1000 genomes]
rs1493325	0.94[ASN][1000 genomes]
rs17595010	0.94[ASN][1000 genomes]
rs17595325	0.92[ASN][1000 genomes]
rs17595367	0.92[ASN][1000 genomes]
rs17602381	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17665306	0.92[ASN][1000 genomes]
rs4382947	0.84[ASN][1000 genomes]
rs4417318	0.80[ASN][1000 genomes]
rs4454757	0.92[ASN][1000 genomes]
rs4491264	0.92[ASN][1000 genomes]
rs4567505	0.92[ASN][1000 genomes]
rs4758743	0.94[ASN][1000 genomes]
rs4758744	0.91[ASN][1000 genomes]
rs4758745	0.90[ASN][1000 genomes]
rs55661627	0.84[ASN][1000 genomes]
rs61127975	0.99[ASN][1000 genomes]
rs61922949	0.99[ASN][1000 genomes]
rs61922950	0.99[ASN][1000 genomes]
rs61923065	0.92[ASN][1000 genomes]
rs61923066	0.92[ASN][1000 genomes]
rs61923067	0.91[ASN][1000 genomes]
rs61923074	0.84[ASN][1000 genomes]
rs61925366	0.94[ASN][1000 genomes]
rs66587505	0.94[ASN][1000 genomes]
rs7131926	0.83[ASN][1000 genomes]
rs72648145	0.94[ASN][1000 genomes]
rs7310323	0.98[ASN][1000 genomes]
rs7314355	0.98[ASN][1000 genomes]
rs7973882	0.91[ASN][1000 genomes]
rs7977642	0.95[ASN][1000 genomes]
rs7979069	0.98[ASN][1000 genomes]
rs8181648	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9668893	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899136	chr12:60373244-60483607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv559103	chr12:60383069-60483607	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1048137	chr12:60432594-60515455	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv427913	chr12:60462443-60569344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60478000-60489000	Weak transcription	Pancreas	Pancrea
2	chr12:60478600-60492800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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