Variant report

Variant	rs12227514
Chromosome Location	chr12:60558709-60558710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:60558094..60560220-chr12:60756513..60758831,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251822	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10506408	0.99[ASN][1000 genomes]
rs10877392	0.91[ASN][1000 genomes]
rs11173327	0.96[ASN][1000 genomes]
rs11173328	0.97[ASN][1000 genomes]
rs11173329	0.94[ASN][1000 genomes]
rs11173336	0.97[ASN][1000 genomes]
rs11173337	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11173339	0.97[ASN][1000 genomes]
rs11173340	0.97[ASN][1000 genomes]
rs11173341	0.97[ASN][1000 genomes]
rs11173343	0.99[ASN][1000 genomes]
rs11173345	0.99[ASN][1000 genomes]
rs11173346	0.99[ASN][1000 genomes]
rs11173351	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11173359	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11173361	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11173367	0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs11173386	0.83[ASN][1000 genomes]
rs12226976	0.92[ASN][1000 genomes]
rs12228823	0.82[ASN][1000 genomes]
rs12230599	0.81[ASN][1000 genomes]
rs12230817	0.97[ASN][1000 genomes]
rs12231312	0.99[ASN][1000 genomes]
rs12231943	0.82[ASN][1000 genomes]
rs1319775	0.85[ASN][1000 genomes]
rs1493325	0.97[ASN][1000 genomes]
rs1504442	0.83[ASN][1000 genomes]
rs1504443	0.83[ASN][1000 genomes]
rs17595010	0.97[ASN][1000 genomes]
rs17595325	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17595367	0.99[ASN][1000 genomes]
rs17602381	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17665306	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4143650	0.85[ASN][1000 genomes]
rs4265627	0.87[ASN][1000 genomes]
rs4417318	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4454757	0.99[ASN][1000 genomes]
rs4491264	0.99[ASN][1000 genomes]
rs4567505	0.99[ASN][1000 genomes]
rs4758743	0.97[ASN][1000 genomes]
rs4758744	0.99[ASN][1000 genomes]
rs4758745	0.98[ASN][1000 genomes]
rs4758859	0.82[ASN][1000 genomes]
rs55661627	0.92[ASN][1000 genomes]
rs61127975	0.91[ASN][1000 genomes]
rs61487567	0.82[ASN][1000 genomes]
rs61922947	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61922949	0.92[ASN][1000 genomes]
rs61922950	0.92[ASN][1000 genomes]
rs61923065	0.99[ASN][1000 genomes]
rs61923066	0.99[ASN][1000 genomes]
rs61923067	0.99[ASN][1000 genomes]
rs61923074	0.92[ASN][1000 genomes]
rs61923092	0.87[ASN][1000 genomes]
rs61923093	0.84[ASN][1000 genomes]
rs61923121	0.85[ASN][1000 genomes]
rs61923124	0.83[ASN][1000 genomes]
rs61923127	0.83[ASN][1000 genomes]
rs61923129	0.83[ASN][1000 genomes]
rs61923130	0.82[ASN][1000 genomes]
rs61923132	0.82[ASN][1000 genomes]
rs61923156	0.81[ASN][1000 genomes]
rs61923157	0.81[ASN][1000 genomes]
rs61925366	0.97[ASN][1000 genomes]
rs6581305	0.85[ASN][1000 genomes]
rs66587505	0.97[ASN][1000 genomes]
rs7131926	0.90[ASN][1000 genomes]
rs7134267	0.82[ASN][1000 genomes]
rs72648145	0.97[ASN][1000 genomes]
rs7310323	0.93[ASN][1000 genomes]
rs7314355	0.93[ASN][1000 genomes]
rs7957100	0.83[ASN][1000 genomes]
rs7973882	0.99[ASN][1000 genomes]
rs7977642	0.87[ASN][1000 genomes]
rs7979069	0.93[ASN][1000 genomes]
rs8181648	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs959645	0.83[ASN][1000 genomes]
rs9634280	0.83[ASN][1000 genomes]
rs9634281	0.83[ASN][1000 genomes]
rs9668893	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427913	chr12:60462443-60569344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2760273	chr12:60489188-60561925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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