Variant report

Variant	rs66587505
Chromosome Location	chr12:60520665-60520666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10506408	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10784027	0.86[EUR][1000 genomes]
rs10784028	0.86[EUR][1000 genomes]
rs10877392	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11173327	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11173328	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173329	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11173336	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173337	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs11173338	0.86[EUR][1000 genomes]
rs11173339	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173340	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173341	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173343	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11173345	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11173346	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11173351	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11173359	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11173361	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11173367	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11173386	0.81[ASN][1000 genomes]
rs12226976	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12227514	0.97[ASN][1000 genomes]
rs12228823	0.81[ASN][1000 genomes]
rs12230817	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12231312	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12231943	0.81[ASN][1000 genomes]
rs1319775	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1389255	0.86[EUR][1000 genomes]
rs1493325	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504442	0.81[ASN][1000 genomes]
rs1504443	0.81[ASN][1000 genomes]
rs17595010	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17595325	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17595367	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17602381	0.95[ASN][1000 genomes]
rs17665306	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2014074	0.86[EUR][1000 genomes]
rs2172500	0.81[EUR][1000 genomes]
rs3847662	0.86[EUR][1000 genomes]
rs3847663	0.86[EUR][1000 genomes]
rs3907482	0.85[EUR][1000 genomes]
rs4093759	0.87[EUR][1000 genomes]
rs4143650	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4265627	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4382947	0.84[AFR][1000 genomes]
rs4417318	0.85[ASN][1000 genomes]
rs4454757	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4491264	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4567505	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4625509	0.81[EUR][1000 genomes]
rs4758743	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4758744	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4758745	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4758859	0.81[ASN][1000 genomes]
rs55661627	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61127975	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61487567	0.81[ASN][1000 genomes]
rs61922947	0.94[ASN][1000 genomes]
rs61922949	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61922950	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61923065	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61923066	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61923067	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61923074	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61923092	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61923093	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61923121	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61923124	0.81[ASN][1000 genomes]
rs61923127	0.81[ASN][1000 genomes]
rs61923129	0.81[ASN][1000 genomes]
rs61923130	0.81[ASN][1000 genomes]
rs61923132	0.81[ASN][1000 genomes]
rs61925366	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6581305	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7131926	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7134267	0.81[ASN][1000 genomes]
rs7134663	0.86[EUR][1000 genomes]
rs7135031	0.82[EUR][1000 genomes]
rs72648145	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7298315	0.87[EUR][1000 genomes]
rs7310323	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7314355	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs735926	0.81[EUR][1000 genomes]
rs7957100	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7967860	0.82[EUR][1000 genomes]
rs7973882	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7977065	0.87[EUR][1000 genomes]
rs7977642	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7979069	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8181648	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs959645	0.82[ASN][1000 genomes]
rs9634280	0.81[ASN][1000 genomes]
rs9634281	0.81[ASN][1000 genomes]
rs9668893	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428591	chr12:60446360-60631044	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv427913	chr12:60462443-60569344	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2760273	chr12:60489188-60561925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1812349	chr12:60516593-60524969	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv1825056	chr12:60518417-60524969	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	esv1839637	chr12:60518599-60524927	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	esv1839958	chr12:60518599-60524927	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	esv1847663	chr12:60518599-60524927	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv511495	chr12:60518599-60541932	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv559104	chr12:60518842-60523366	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv559105	chr12:60518842-60523699	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	nsv559106	chr12:60518842-60524514	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv559107	chr12:60518842-60540108	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv559108	chr12:60518842-60548334	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3480964	chr12:60519885-60526983	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
16	nsv435632	chr12:60520435-60525141	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60517800-60523600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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