Variant report

Variant	rs71393340
Chromosome Location	chr2:64156839-64156840
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1440005	1.00[AFR][1000 genomes]
rs2422112	1.00[AFR][1000 genomes]
rs2901644	1.00[AFR][1000 genomes]
rs4381767	1.00[AFR][1000 genomes]
rs4507090	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv531376	chr2:64094322-64521876	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv521717	chr2:64104132-64186582	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv874236	chr2:64154215-64179235	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64114000-64212000	Weak transcription	Small Intestine	intestine
2	chr2:64114200-64174800	Weak transcription	Right Ventricle	heart
3	chr2:64129600-64164000	Weak transcription	NHLF	lung
4	chr2:64129600-64201000	Weak transcription	Hela-S3	cervix
5	chr2:64130400-64167600	Weak transcription	Fetal Heart	heart
6	chr2:64130400-64168400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:64130400-64211200	Weak transcription	Fetal Brain Male	brain
8	chr2:64130600-64168000	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:64130800-64174800	Weak transcription	Stomach Mucosa	stomach
10	chr2:64137400-64204800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr2:64138600-64168600	Weak transcription	Brain Angular Gyrus	brain
12	chr2:64139000-64168200	Weak transcription	Psoas Muscle	Psoas
13	chr2:64139000-64172800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:64139800-64161600	Weak transcription	HSMMtube	muscle
15	chr2:64139800-64167400	Weak transcription	NHEK	skin
16	chr2:64139800-64220600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr2:64140400-64187600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr2:64140400-64188800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr2:64140600-64172400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr2:64141200-64187600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr2:64141400-64167800	Weak transcription	Brain Anterior Caudate	brain
22	chr2:64141400-64189200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr2:64141600-64160400	Weak transcription	HUVEC	blood vessel
24	chr2:64141600-64164400	Weak transcription	Osteobl	bone
25	chr2:64141800-64160800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr2:64142600-64167600	Weak transcription	K562	blood
27	chr2:64142800-64189200	Weak transcription	Brain Substantia Nigra	brain
28	chr2:64143400-64167800	Weak transcription	GM12878-XiMat	blood
29	chr2:64147600-64159000	Weak transcription	Fetal Kidney	kidney
30	chr2:64147600-64159200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:64147600-64159800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr2:64147600-64178000	Weak transcription	A549	lung
33	chr2:64147800-64160200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr2:64147800-64160400	Weak transcription	Primary B cells from peripheral blood	blood
35	chr2:64147800-64160400	Weak transcription	NH-A	brain
36	chr2:64148000-64160800	Weak transcription	NHDF-Ad	bronchial
37	chr2:64148000-64164600	Weak transcription	HSMM	muscle
38	chr2:64149800-64167600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr2:64153400-64159000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr2:64153600-64160800	Weak transcription	Primary T cells from cord blood	blood
41	chr2:64154400-64159400	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr2:64154400-64159800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr2:64154400-64160200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr2:64154400-64168400	Weak transcription	Esophagus	oesophagus
45	chr2:64154400-64168400	Weak transcription	Ovary	ovary
46	chr2:64154400-64176800	Weak transcription	Colonic Mucosa	Colon
47	chr2:64154400-64202600	Weak transcription	Spleen	Spleen
48	chr2:64154600-64159000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr2:64154600-64159200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr2:64154600-64159400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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