Variant report

Variant	rs71397236
Chromosome Location	chr15:72653964-72653965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72653000..72656526-chr15:72666576..72670191,4	MCF-7	breast:
2	chr15:72636459..72639091-chr15:72653803..72655961,2	K562	blood:
3	chr15:72653116..72655122-chr15:72658200..72660549,2	K562	blood:
4	chr15:72653916..72656612-chr15:72659800..72662436,2	K562	blood:
5	chr15:72649583..72651262-chr15:72653562..72655522,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260729	Chromatin interaction
ENSG00000213614	Chromatin interaction
ENSG00000260339	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10220850	0.81[EUR][1000 genomes]
rs12900465	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12902983	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12904334	1.00[AMR][1000 genomes]
rs12904378	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12904667	1.00[AMR][1000 genomes]
rs12907707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12908883	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12914829	1.00[AMR][1000 genomes]
rs2912203	1.00[AMR][1000 genomes]
rs2912204	1.00[AMR][1000 genomes]
rs2912215	1.00[AMR][1000 genomes]
rs2912222	1.00[AMR][1000 genomes]
rs2912224	1.00[AMR][1000 genomes]
rs2912225	1.00[AMR][1000 genomes]
rs2959916	1.00[AMR][1000 genomes]
rs2959917	1.00[AMR][1000 genomes]
rs2959918	1.00[AMR][1000 genomes]
rs2959919	1.00[AMR][1000 genomes]
rs2959923	1.00[AMR][1000 genomes]
rs2959924	1.00[AMR][1000 genomes]
rs2959927	1.00[AMR][1000 genomes]
rs2959929	1.00[AMR][1000 genomes]
rs2959931	1.00[AMR][1000 genomes]
rs33999922	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34115124	1.00[AFR][1000 genomes]
rs34511502	1.00[AMR][1000 genomes]
rs34607939	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35457238	1.00[AMR][1000 genomes]
rs35511514	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71395074	1.00[AFR][1000 genomes]
rs71397231	1.00[AFR][1000 genomes]
rs71397232	1.00[AFR][1000 genomes]
rs71397233	1.00[AFR][1000 genomes]
rs71411063	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72613200-72666800	Weak transcription	Fetal Heart	heart
2	chr15:72613400-72667600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:72630200-72656200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:72634600-72667400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:72640600-72667200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:72641800-72664800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:72642000-72667000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:72644000-72660400	Weak transcription	Fetal Brain Male	brain
9	chr15:72648400-72667600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:72648600-72667000	Weak transcription	Colonic Mucosa	Colon
11	chr15:72648600-72667200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr15:72648800-72667000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:72649000-72662200	Weak transcription	Colon Smooth Muscle	Colon
14	chr15:72649000-72667600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:72649200-72658200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr15:72649200-72658200	Weak transcription	Dnd41	blood
17	chr15:72649200-72658400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr15:72649200-72660000	Weak transcription	Fetal Lung	lung
19	chr15:72649200-72660600	Weak transcription	Fetal Kidney	kidney
20	chr15:72649200-72660800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:72649200-72661600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr15:72649200-72662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr15:72649200-72663800	Weak transcription	Pancreas	Pancrea
24	chr15:72649200-72666800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr15:72649200-72667000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:72649200-72667000	Weak transcription	Fetal Brain Female	brain
27	chr15:72649200-72667600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr15:72649400-72658200	Weak transcription	Hela-S3	cervix
29	chr15:72649400-72659600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:72649400-72663400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr15:72649400-72666600	Weak transcription	Gastric	stomach
32	chr15:72649400-72667000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr15:72649600-72662400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:72649800-72660800	Weak transcription	Brain Germinal Matrix	brain
35	chr15:72650000-72655200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:72650000-72660600	Weak transcription	Liver	Liver
37	chr15:72650200-72655200	Weak transcription	Fetal Intestine Large	intestine
38	chr15:72650200-72658400	Weak transcription	Fetal Thymus	thymus
39	chr15:72650400-72655600	Weak transcription	Aorta	Aorta
40	chr15:72650400-72657800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:72650600-72660600	Weak transcription	Right Ventricle	heart
42	chr15:72650800-72659800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr15:72651200-72654000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr15:72651200-72654600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr15:72651200-72655200	Weak transcription	Thymus	Thymus
46	chr15:72651400-72667200	Weak transcription	Brain Angular Gyrus	brain
47	chr15:72651600-72654400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:72651600-72654800	Weak transcription	Primary T cells from cord blood	blood
49	chr15:72651600-72656800	Strong transcription	Primary B cells from peripheral blood	blood
50	chr15:72651600-72658000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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