Variant report

Variant	rs12914829
Chromosome Location	chr15:72836084-72836085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72834799..72837432-chr15:72853952..72855840,2	MCF-7	breast:
2	chr15:72829970..72831698-chr15:72833196..72836146,3	MCF-7	breast:
3	chr15:72823930..72827989-chr15:72833132..72836726,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10220850	1.00[CEU][hapmap]
rs12902983	1.00[AMR][1000 genomes]
rs12904334	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12904378	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs12904667	1.00[AMR][1000 genomes]
rs12906942	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12907707	1.00[AMR][1000 genomes]
rs12908883	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs2912203	1.00[AMR][1000 genomes]
rs2912204	1.00[AMR][1000 genomes]
rs2912215	1.00[AMR][1000 genomes]
rs2912222	1.00[AMR][1000 genomes]
rs2912224	1.00[AMR][1000 genomes]
rs2912225	1.00[AMR][1000 genomes]
rs2959916	1.00[AMR][1000 genomes]
rs2959917	1.00[AMR][1000 genomes]
rs2959918	1.00[AMR][1000 genomes]
rs2959919	1.00[AMR][1000 genomes]
rs2959923	1.00[AMR][1000 genomes]
rs2959924	1.00[AMR][1000 genomes]
rs2959927	1.00[AMR][1000 genomes]
rs2959929	1.00[AMR][1000 genomes]
rs2959931	1.00[AMR][1000 genomes]
rs34511502	1.00[AMR][1000 genomes]
rs34607939	1.00[AMR][1000 genomes]
rs35150214	1.00[JPT][hapmap]
rs35457238	1.00[AMR][1000 genomes]
rs35592085	0.91[ASN][1000 genomes]
rs35712178	1.00[ASN][1000 genomes]
rs71397236	1.00[AMR][1000 genomes]
rs71397249	0.91[ASN][1000 genomes]
rs71411063	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv534037	chr15:72659210-72964029	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv469704	chr15:72669374-72853927	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
4	nsv482685	chr15:72669374-72853927	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
5	nsv1050558	chr15:72739150-72860350	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
6	nsv542427	chr15:72739150-72860350	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv569947	chr15:72800853-72878772	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1054626	chr15:72811402-72867502	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
9	nsv569948	chr15:72811402-72878772	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
10	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
11	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
12	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
13	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72796800-72855400	Weak transcription	Esophagus	oesophagus
2	chr15:72805600-72848200	Weak transcription	Fetal Brain Male	brain
3	chr15:72806600-72846800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:72809000-72855400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:72814400-72847000	Weak transcription	Ovary	ovary
6	chr15:72814800-72859200	Weak transcription	Brain Angular Gyrus	brain
7	chr15:72815600-72837200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:72815600-72838200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr15:72815800-72837200	Weak transcription	HepG2	liver
10	chr15:72818200-72837200	Weak transcription	A549	lung
11	chr15:72819600-72837000	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:72826200-72840200	Weak transcription	Hela-S3	cervix
13	chr15:72826800-72837000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:72826800-72837200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr15:72827200-72837600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:72827800-72846800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr15:72828000-72837000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr15:72828600-72869800	Weak transcription	Aorta	Aorta
19	chr15:72829200-72837200	Weak transcription	Small Intestine	intestine
20	chr15:72829200-72880800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr15:72829400-72837000	Weak transcription	Primary T cells from cord blood	blood
22	chr15:72829600-72837000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:72829600-72837200	Weak transcription	NH-A	brain
24	chr15:72829800-72837400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:72830200-72846800	Weak transcription	Brain Anterior Caudate	brain
26	chr15:72830400-72840200	Weak transcription	NHLF	lung
27	chr15:72830400-72866800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:72830800-72867400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr15:72831000-72854600	Weak transcription	Brain Hippocampus Middle	brain
30	chr15:72831400-72848400	Weak transcription	Brain Substantia Nigra	brain
31	chr15:72831600-72837200	Weak transcription	HSMM	muscle
32	chr15:72832000-72837200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:72833200-72837000	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr15:72833200-72837200	Weak transcription	Liver	Liver
35	chr15:72833400-72836200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr15:72833400-72836800	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr15:72833400-72837000	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr15:72833400-72837200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr15:72833400-72840200	Weak transcription	NHDF-Ad	bronchial
40	chr15:72833400-72846600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:72833400-72858600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr15:72833600-72836800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:72833600-72836800	Weak transcription	Fetal Lung	lung
44	chr15:72833600-72836800	Weak transcription	Dnd41	blood
45	chr15:72833600-72837000	Weak transcription	HMEC	breast
46	chr15:72833600-72837000	Weak transcription	Osteobl	bone
47	chr15:72833600-72837200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:72833600-72837200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:72833600-72837200	Weak transcription	Primary hematopoietic stem cells	blood
50	chr15:72833600-72837200	Weak transcription	Duodenum Mucosa	Duodenum

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