Variant report

Variant	rs71400168
Chromosome Location	chr16:81695680-81695681
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81431237..81433248-chr16:81694518..81697342,2	MCF-7	breast:
2	chr16:81694488..81699178-chr16:81699936..81703894,5	MCF-7	breast:
3	chr16:81695255..81697707-chr16:81713897..81716824,2	MCF-7	breast:
4	chr16:81692259..81694475-chr16:81694921..81697431,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1128658	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12920705	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv907011	chr16:81639190-81757252	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81676800-81695800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr16:81682400-81722400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr16:81683600-81715600	Strong transcription	Primary T cells from cord blood	blood
4	chr16:81683800-81721800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr16:81684400-81699000	Weak transcription	Aorta	Aorta
6	chr16:81684400-81702400	Strong transcription	Primary B cells from peripheral blood	blood
7	chr16:81684400-81722200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr16:81684400-81722200	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr16:81684800-81705400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr16:81685000-81700800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr16:81685200-81701000	Strong transcription	Dnd41	blood
12	chr16:81685400-81703600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr16:81685800-81701000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr16:81686200-81705800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr16:81686600-81697400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr16:81686600-81715400	Strong transcription	Placenta	Placenta
17	chr16:81686600-81721600	Weak transcription	NH-A	brain
18	chr16:81686600-81725000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr16:81687200-81699200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr16:81687200-81704800	Weak transcription	Fetal Brain Male	brain
21	chr16:81687400-81706800	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr16:81688400-81700600	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr16:81688400-81736800	Weak transcription	NHDF-Ad	bronchial
24	chr16:81688800-81699600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr16:81689200-81696000	Weak transcription	Right Ventricle	heart
26	chr16:81689200-81700000	Strong transcription	K562	blood
27	chr16:81689400-81713800	Weak transcription	Right Atrium	heart
28	chr16:81689800-81696800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr16:81689800-81700800	Strong transcription	Fetal Intestine Small	intestine
30	chr16:81689800-81722200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr16:81689800-81722400	Strong transcription	Fetal Intestine Large	intestine
32	chr16:81690000-81699600	Strong transcription	Fetal Lung	lung
33	chr16:81690000-81701000	Strong transcription	HepG2	liver
34	chr16:81690000-81701200	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr16:81690000-81702400	Weak transcription	Fetal Kidney	kidney
36	chr16:81690000-81704800	Strong transcription	A549	lung
37	chr16:81690400-81699800	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr16:81690600-81699600	Strong transcription	Primary hematopoietic stem cells	blood
39	chr16:81690600-81700200	Strong transcription	Fetal Muscle Leg	muscle
40	chr16:81690600-81711000	Strong transcription	Adipose Nuclei	Adipose
41	chr16:81690800-81700600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr16:81690800-81700800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr16:81690800-81709000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr16:81691000-81695800	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr16:81691000-81699800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr16:81691000-81703200	Strong transcription	Thymus	Thymus
47	chr16:81691200-81699600	Strong transcription	Fetal Muscle Trunk	muscle
48	chr16:81691200-81701600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr16:81691200-81709400	Strong transcription	Lung	lung
50	chr16:81691200-81710400	Strong transcription	Sigmoid Colon	Sigmoid Colon

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