Variant report

Variant	rs1128658
Chromosome Location	chr16:81700808-81700809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81694488..81699178-chr16:81699936..81703894,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PLCG2-4	chr16:81698959-81700879	NONHSAT143952

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12103192	1.00[ASN][1000 genomes]
rs12920705	0.83[EUR][1000 genomes]
rs12933287	1.00[ASN][1000 genomes]
rs56812592	1.00[ASN][1000 genomes]
rs71400168	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73600445	1.00[ASN][1000 genomes]
rs8055149	1.00[ASN][1000 genomes]
rs9972695	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
2	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
3	nsv907011	chr16:81639190-81757252	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81682400-81722400	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr16:81683600-81715600	Strong transcription	Primary T cells from cord blood	blood
3	chr16:81683800-81721800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr16:81684400-81702400	Strong transcription	Primary B cells from peripheral blood	blood
5	chr16:81684400-81722200	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr16:81684400-81722200	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr16:81684800-81705400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr16:81685200-81701000	Strong transcription	Dnd41	blood
9	chr16:81685400-81703600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr16:81685800-81701000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr16:81686200-81705800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr16:81686600-81715400	Strong transcription	Placenta	Placenta
13	chr16:81686600-81721600	Weak transcription	NH-A	brain
14	chr16:81686600-81725000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr16:81687200-81704800	Weak transcription	Fetal Brain Male	brain
16	chr16:81687400-81706800	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr16:81688400-81736800	Weak transcription	NHDF-Ad	bronchial
18	chr16:81689400-81713800	Weak transcription	Right Atrium	heart
19	chr16:81689800-81722200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr16:81689800-81722400	Strong transcription	Fetal Intestine Large	intestine
21	chr16:81690000-81701000	Strong transcription	HepG2	liver
22	chr16:81690000-81701200	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr16:81690000-81702400	Weak transcription	Fetal Kidney	kidney
24	chr16:81690000-81704800	Strong transcription	A549	lung
25	chr16:81690600-81711000	Strong transcription	Adipose Nuclei	Adipose
26	chr16:81690800-81709000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr16:81691000-81703200	Strong transcription	Thymus	Thymus
28	chr16:81691200-81701600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr16:81691200-81709400	Strong transcription	Lung	lung
30	chr16:81691200-81710400	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr16:81691200-81721200	Strong transcription	Liver	Liver
32	chr16:81691400-81701000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr16:81691400-81702400	Strong transcription	Placenta Amnion	Placenta Amnion
34	chr16:81691600-81702400	Weak transcription	Hela-S3	cervix
35	chr16:81692200-81702000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr16:81693200-81701000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr16:81693400-81712800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr16:81694200-81701800	Strong transcription	Spleen	Spleen
39	chr16:81694200-81707600	Strong transcription	Gastric	stomach
40	chr16:81694800-81702200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr16:81695000-81701600	Weak transcription	Fetal Heart	heart
42	chr16:81695000-81702200	Weak transcription	HUVEC	blood vessel
43	chr16:81695200-81705800	Weak transcription	GM12878-XiMat	blood
44	chr16:81695200-81712000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr16:81695200-81717000	Strong transcription	NHEK	skin
46	chr16:81695400-81712400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr16:81696000-81712200	Weak transcription	NHLF	lung
48	chr16:81696200-81710800	Weak transcription	Small Intestine	intestine
49	chr16:81696200-81712400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr16:81697400-81703400	Weak transcription	Stomach Mucosa	stomach

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