Variant report

Variant	rs8055149
Chromosome Location	chr16:81779785-81779786
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81770181..81773128-chr16:81778847..81781653,2	MCF-7	breast:
2	chr16:81778728..81781397-chr16:81802004..81803595,2	K562	blood:
3	chr16:81777894..81779914-chr17:57921380..57923077,2	MCF-7	breast:
4	chr16:81778471..81781580-chr16:81784952..81787764,5	K562	blood:
5	chr16:81779765..81782819-chr16:81784952..81788373,6	K562	blood:
6	chr16:81041904..81044341-chr16:81779163..81781549,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197943	Chromatin interaction
ENSG00000261218	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1128658	1.00[ASN][1000 genomes]
rs12103192	1.00[ASN][1000 genomes]
rs12933287	1.00[ASN][1000 genomes]
rs56812592	1.00[ASN][1000 genomes]
rs73600445	1.00[ASN][1000 genomes]
rs9972695	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573363	chr16:81758463-81780565	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv457577	chr16:81773209-81808233	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv573364	chr16:81773209-81808233	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81772200-81779800	Weak transcription	Esophagus	oesophagus
2	chr16:81778800-81780400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr16:81779000-81780400	Flanking Active TSS	K562	blood
4	chr16:81779200-81779800	Flanking Active TSS	A549	lung
5	chr16:81779200-81780400	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr16:81779200-81780400	Active TSS	Brain Hippocampus Middle	brain
7	chr16:81779200-81780400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr16:81779200-81780600	Flanking Active TSS	Dnd41	blood
9	chr16:81779200-81780600	Flanking Active TSS	GM12878-XiMat	blood
10	chr16:81779400-81779800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr16:81779400-81780000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
12	chr16:81779400-81780000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr16:81779400-81780200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr16:81779400-81780200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr16:81779400-81780200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr16:81779400-81780200	Active TSS	Primary T killer memory cells from peripheral blood	blood
17	chr16:81779400-81780200	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr16:81779400-81780200	Active TSS	Brain Cingulate Gyrus	brain
19	chr16:81779400-81780400	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr16:81779400-81780400	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr16:81779400-81780400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr16:81779400-81780400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr16:81779400-81780400	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr16:81779400-81780400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr16:81779400-81780400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr16:81779400-81780400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr16:81779400-81780400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr16:81779400-81780400	Active TSS	Brain Anterior Caudate	brain
29	chr16:81779400-81780400	Active TSS	Rectal Smooth Muscle	rectum
30	chr16:81779400-81780400	Flanking Active TSS	Hela-S3	cervix
31	chr16:81779400-81780400	Active TSS	HSMMtube	muscle
32	chr16:81779400-81780600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr16:81779400-81780600	Enhancers	Spleen	Spleen
34	chr16:81779400-81786200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr16:81779600-81779800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
36	chr16:81779600-81779800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr16:81779600-81779800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr16:81779600-81779800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr16:81779600-81779800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr16:81779600-81779800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr16:81779600-81779800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr16:81779600-81779800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
43	chr16:81779600-81779800	Flanking Active TSS	Brain Angular Gyrus	brain
44	chr16:81779600-81779800	Active TSS	Brain Inferior Temporal Lobe	brain
45	chr16:81779600-81779800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr16:81779600-81779800	Flanking Active TSS	Brain Substantia Nigra	brain
47	chr16:81779600-81779800	Flanking Active TSS	Colonic Mucosa	Colon
48	chr16:81779600-81779800	Active TSS	Colon Smooth Muscle	Colon
49	chr16:81779600-81779800	Flanking Active TSS	Duodenum Mucosa	Duodenum
50	chr16:81779600-81779800	Flanking Active TSS	Fetal Heart	heart

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