Variant report

Variant	rs12103192
Chromosome Location	chr16:81704433-81704434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81703842..81705571-chr16:81710332..81712926,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1128658	1.00[ASN][1000 genomes]
rs12933287	1.00[ASN][1000 genomes]
rs56812592	1.00[ASN][1000 genomes]
rs73600445	1.00[ASN][1000 genomes]
rs8055149	1.00[ASN][1000 genomes]
rs9972695	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
2	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
3	nsv907011	chr16:81639190-81757252	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81682400-81722400	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr16:81683600-81715600	Strong transcription	Primary T cells from cord blood	blood
3	chr16:81683800-81721800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr16:81684400-81722200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr16:81684400-81722200	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr16:81684800-81705400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr16:81686200-81705800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr16:81686600-81715400	Strong transcription	Placenta	Placenta
9	chr16:81686600-81721600	Weak transcription	NH-A	brain
10	chr16:81686600-81725000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr16:81687200-81704800	Weak transcription	Fetal Brain Male	brain
12	chr16:81687400-81706800	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr16:81688400-81736800	Weak transcription	NHDF-Ad	bronchial
14	chr16:81689400-81713800	Weak transcription	Right Atrium	heart
15	chr16:81689800-81722200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr16:81689800-81722400	Strong transcription	Fetal Intestine Large	intestine
17	chr16:81690000-81704800	Strong transcription	A549	lung
18	chr16:81690600-81711000	Strong transcription	Adipose Nuclei	Adipose
19	chr16:81690800-81709000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr16:81691200-81709400	Strong transcription	Lung	lung
21	chr16:81691200-81710400	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr16:81691200-81721200	Strong transcription	Liver	Liver
23	chr16:81693400-81712800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr16:81694200-81707600	Strong transcription	Gastric	stomach
25	chr16:81695200-81705800	Weak transcription	GM12878-XiMat	blood
26	chr16:81695200-81712000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr16:81695200-81717000	Strong transcription	NHEK	skin
28	chr16:81695400-81712400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr16:81696000-81712200	Weak transcription	NHLF	lung
30	chr16:81696200-81710800	Weak transcription	Small Intestine	intestine
31	chr16:81696200-81712400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr16:81697400-81712400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr16:81698400-81705800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr16:81698600-81705200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr16:81698600-81709400	Weak transcription	HSMM	muscle
36	chr16:81698800-81721400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr16:81699000-81704800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr16:81699200-81725600	Weak transcription	Osteobl	bone
39	chr16:81699400-81705800	Weak transcription	Brain Anterior Caudate	brain
40	chr16:81699400-81715400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr16:81699400-81726000	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr16:81699600-81705800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr16:81699800-81705600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr16:81699800-81712400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr16:81700000-81704800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr16:81700000-81705600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr16:81700000-81705800	Weak transcription	HMEC	breast
48	chr16:81700000-81705800	Weak transcription	K562	blood
49	chr16:81701000-81725200	Weak transcription	Aorta	Aorta
50	chr16:81701200-81705400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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