Variant report

Variant	rs71407747
Chromosome Location	chr14:38457158-38457159
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10134624	0.81[EUR][1000 genomes]
rs10146385	0.80[EUR][1000 genomes]
rs12147106	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17554993	0.86[EUR][1000 genomes]
rs1952789	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1952790	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2415421	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415422	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71407745	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7153182	0.81[EUR][1000 genomes]
rs7154853	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7158383	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv564387	chr14:38357864-38563111	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv901651	chr14:38419360-38556242	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38455600-38460200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr14:38455600-38460400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr14:38455800-38458200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:38455800-38458200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:38455800-38458200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr14:38455800-38461000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:38455800-38461000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:38457000-38457200	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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