Variant report

Variant	rs7141091
Chromosome Location	chr14:70525531-70525532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10142899	0.91[CHD][hapmap]
rs1122271	0.91[CHD][hapmap]
rs11629291	0.89[CHD][hapmap]
rs12435978	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12436004	1.00[CEU][hapmap];0.84[CHD][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs12883884	0.88[CHD][hapmap]
rs150957	0.81[CHB][hapmap];0.87[ASN][1000 genomes]
rs227434	0.86[CHD][hapmap]
rs2839867	0.91[CHD][hapmap]
rs28710300	0.95[ASN][1000 genomes]
rs3742915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3809401	0.80[CHD][hapmap]
rs61151703	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7142591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142759	0.91[CHD][hapmap]
rs7152295	0.97[ASN][1000 genomes]
rs8014694	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9944057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs998919	0.91[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70512800-70535600	Weak transcription	Psoas Muscle	Psoas
2	chr14:70514600-70531200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:70517800-70526200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:70518000-70526200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr14:70521400-70525600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:70524600-70526400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:70525200-70525600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:70525400-70526800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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