Variant report

Variant	rs71412295
Chromosome Location	chr15:83781859-83781860
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:83775374..83777785-chr15:83779584..83782378,2	MCF-7	breast:
2	chr15:83777307..83779024-chr15:83779702..83782289,2	K562	blood:

Variant related genes	Relation type
ENSG00000136404	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34256265	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36070450	1.00[ASN][1000 genomes]
rs4441234	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62010249	1.00[ASN][1000 genomes]
rs73453289	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534418	chr15:83770116-83960718	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83777200-83798400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr15:83777200-83834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:83777600-83786800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:83777800-83782800	Weak transcription	HSMM	muscle
5	chr15:83777800-83783600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:83777800-83798800	Weak transcription	HSMMtube	muscle
7	chr15:83778000-83782200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:83778000-83784200	Weak transcription	GM12878-XiMat	blood
9	chr15:83778200-83801600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr15:83778200-83806400	Weak transcription	Dnd41	blood
11	chr15:83778400-83782000	Weak transcription	Fetal Brain Female	brain
12	chr15:83778400-83782600	Weak transcription	Primary B cells from cord blood	blood
13	chr15:83778600-83782800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:83778600-83782800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:83778600-83797600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:83778800-83799000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:83779400-83782000	Weak transcription	Esophagus	oesophagus
18	chr15:83779400-83782800	Weak transcription	Brain Germinal Matrix	brain
19	chr15:83779400-83812800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr15:83780000-83782200	Enhancers	Lung	lung
21	chr15:83780000-83810000	Weak transcription	Fetal Lung	lung
22	chr15:83780600-83798600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:83780800-83782200	Enhancers	NH-A	brain
24	chr15:83780800-83782600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:83780800-83782600	Enhancers	Spleen	Spleen
26	chr15:83780800-83783000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr15:83780800-83783200	Enhancers	Left Ventricle	heart
28	chr15:83780800-83783200	Enhancers	Right Atrium	heart
29	chr15:83780800-83783400	Enhancers	Adipose Nuclei	Adipose
30	chr15:83781000-83782000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:83781000-83782200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr15:83781000-83782600	Enhancers	Right Ventricle	heart
33	chr15:83781000-83783000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:83781000-83808200	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr15:83781000-83808200	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr15:83781200-83782000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:83781200-83782000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr15:83781200-83782000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:83781200-83782000	Flanking Active TSS	Hela-S3	cervix
40	chr15:83781200-83782200	Flanking Active TSS	HUVEC	blood vessel
41	chr15:83781200-83782400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr15:83781200-83782400	Genic enhancers	Fetal Muscle Leg	muscle
43	chr15:83781200-83827200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr15:83781400-83782000	Enhancers	Psoas Muscle	Psoas
45	chr15:83781400-83782000	Enhancers	Stomach Smooth Muscle	stomach
46	chr15:83781400-83782400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:83781400-83782600	Enhancers	NHLF	lung
48	chr15:83781400-83783200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
49	chr15:83781400-83790000	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr15:83781400-83809800	Weak transcription	Brain Substantia Nigra	brain

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